Threading Zmax Znorm MUSTER 5.47 0.94 dPPAS 8.32 0.89 wdPPAS 9.03 0.97 wMUSTER 5.76 0.99 wPPAS 6.46 0.92 dPPAS2 13.66 1.30 PPAS 6.53 0.93 Env-PPAS 9.13 1.14 ================================================================== | Estimated accuracy of your models | ================================================================== Estimated Clusters (N=20200) --------------------- ------------------ Model# C-score TM-score RMSD (A) #decoys density ------ ------- ---------- -------- ------- ------- model1 -0.37 0.67+-0.13 6.0+-3.7 17179 0.680 model2 -3.61 664 0.027 model3 -0.28 16433 0.746 model4 -4.51 175 0.011 model5 -3.63 791 0.026 C-score is a confidence score of the I-TASSER predictions which is typically in [-5,2]. TM-score and RMSD measure how close the model is to the native structure and both are estimated based on the C-score. TM-score is in [0,1] with a value >0.5 implying the model of correct topology. The TM-score and RMSD estimations are made only for the first model because absolute values of TM-score and RMSD for the lower-rank models do not strongly correlate with the C-score. The models are ranked based on the structure density of I-TASSER simulations. Please cite following articles when you use the I-TASSER Suite: 1. Y Zhang. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics, 9: 40 (2008). 2. A Roy, A Kucukural, Y Zhang. I-TASSER: a unified platform for automated protein structure and function prediction. Nature Protocols, 5: 725-738 (2010). 3. J Yang, A Roy, Y Zhang. Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment. Bioinformatics, 29:2588-2595 (2013).