Threading Zmax Znorm MUSTER 4.20 0.72 dPPAS 7.74 0.83 wdPPAS 6.36 0.68 wMUSTER 5.15 0.89 wPPAS 4.78 0.68 dPPAS2 15.93 1.52 PPAS 5.74 0.82 Env-PPAS 6.40 0.80 ================================================================== | Estimated accuracy of your models | ================================================================== Estimated Clusters (N=11034) --------------------- ------------------ Model# C-score TM-score RMSD (A) #decoys density ------ ------- ---------- -------- ------- ------- model1 -3.92 0.29+-0.09 13.7+-4.0 1702 0.023 model2 -3.66 1541 0.030 model3 -4.49 936 0.013 model4 -3.91 968 0.023 model5 -3.49 801 0.035 C-score is a confidence score of the I-TASSER predictions which is typically in [-5,2]. TM-score and RMSD measure how close the model is to the native structure and both are estimated based on the C-score. TM-score is in [0,1] with a value >0.5 implying the model of correct topology. The TM-score and RMSD estimations are made only for the first model because absolute values of TM-score and RMSD for the lower-rank models do not strongly correlate with the C-score. The models are ranked based on the structure density of I-TASSER simulations. Please cite following articles when you use the I-TASSER Suite: 1. Y Zhang. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics, 9: 40 (2008). 2. A Roy, A Kucukural, Y Zhang. I-TASSER: a unified platform for automated protein structure and function prediction. Nature Protocols, 5: 725-738 (2010). 3. J Yang, A Roy, Y Zhang. Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment. Bioinformatics, 29:2588-2595 (2013).