Threading Zmax Znorm MUSTER 7.10 1.22 dPPAS 9.03 0.97 wdPPAS 11.18 1.20 wMUSTER 6.34 1.09 wPPAS 6.09 0.87 dPPAS2 16.69 1.59 PPAS 8.52 1.22 Env-PPAS 16.50 2.06 ================================================================== | Estimated accuracy of your models | ================================================================== Estimated Clusters (N=2949) --------------------- ------------------ Model# C-score TM-score RMSD (A) #decoys density ------ ------- ---------- -------- ------- ------- model1 -1.90 0.49+-0.15 13.7+-4.0 492 0.117 model2 -3.11 252 0.035 model3 -3.56 252 0.022 model4 -3.31 219 0.029 model5 -4.23 161 0.011 C-score is a confidence score of the I-TASSER predictions which is typically in [-5,2]. TM-score and RMSD measure how close the model is to the native structure and both are estimated based on the C-score. TM-score is in [0,1] with a value >0.5 implying the model of correct topology. The TM-score and RMSD estimations are made only for the first model because absolute values of TM-score and RMSD for the lower-rank models do not strongly correlate with the C-score. The models are ranked based on the structure density of I-TASSER simulations. Please cite following articles when you use the I-TASSER Suite: 1. Y Zhang. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics, 9: 40 (2008). 2. A Roy, A Kucukural, Y Zhang. I-TASSER: a unified platform for automated protein structure and function prediction. Nature Protocols, 5: 725-738 (2010). 3. J Yang, A Roy, Y Zhang. Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment. Bioinformatics, 29:2588-2595 (2013).