Threading Zmax Znorm MUSTER 12.45 2.15 dPPAS 39.73 4.27 wdPPAS 49.99 5.38 wMUSTER 15.07 2.60 wPPAS 36.83 5.26 dPPAS2 180.09 17.15 PPAS 27.17 3.88 Env-PPAS 37.77 4.72 ================================================================== | Estimated accuracy of your models | ================================================================== Estimated Clusters (N=5514) --------------------- ------------------ Model# C-score TM-score RMSD (A) #decoys density ------ ------- ---------- -------- ------- ------- model1 0.94 0.84+-0.08 4.3+-2.9 5397 0.449 model2 0.38 2668 0.259 model3 -0.23 1410 0.141 C-score is a confidence score of the I-TASSER predictions which is typically in [-5,2]. TM-score and RMSD measure how close the model is to the native structure and both are estimated based on the C-score. TM-score is in [0,1] with a value >0.5 implying the model of correct topology. The TM-score and RMSD estimations are made only for the first model because absolute values of TM-score and RMSD for the lower-rank models do not strongly correlate with the C-score. The models are ranked based on the structure density of I-TASSER simulations. Please cite following articles when you use the I-TASSER Suite: 1. Y Zhang. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics, 9: 40 (2008). 2. A Roy, A Kucukural, Y Zhang. I-TASSER: a unified platform for automated protein structure and function prediction. Nature Protocols, 5: 725-738 (2010). 3. J Yang, A Roy, Y Zhang. Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment. Bioinformatics, 29:2588-2595 (2013).