I-TASSER results

I-TASSER results for job id Rv2411c

[Click on result.tar.bz2 to download the tarball file including all modelling results listed on this page]

Input Sequence in FASTA format

>protein (551 residues)
MRRVSLPNQLNETRRRSPTRGERIFGGYNTSDVYAMAFDEMFDAQGIVRGPYKGIYAELA
PSDASELKARADALGRAFIDQGITFSLSGQERPFPLDLVPRVISAPEWTRLERGITQRVK
ALECYLDDIYGDQEILRDGVIPRRLVTSCEHFHRQAVGIVPPNGVRIHVAGIDLIRDHRG
DFRVLEDNLRSPSGVSYVMENRRTMARVFPNLFATHRVRAVDDYASHLLRALRNSAATNE
ADPTVVVLTPGVYNSAYFEHSLLARQMGVELVEGRDLFCRDNQVYMRTTEGERQVDVIYR
RIDDAFLDPLQFRADSVLGVAGLVNAARAGNVVLSSAIGNGVGDDKLVYTYVPTMIEYYL
HEKPLLANVETLRCWLDDEREEVLDRIRELVLKPVEGSGGYGIVFGPEASQAELAAVSQK
IRDDPRSWIAQPMMELSTVPTRIEGTLAPRYVDLRPFAVNDGNEVWVLPGGLTRVALVEG
SRVVNSSQGGGSKDTWVLAPRASAAARELGAAQIVRSLPQPLCDPTVDASGYEPHDQQPQ
QQQQQQQQAFH

Predicted Secondary Structure

Sequence	20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| MRRVSLPNQLNETRRRSPTRGERIFGGYNTSDVYAMAFDEMFDAQGIVRGPYKGIYAELAPSDASELKARADALGRAFIDQGITFSLSGQERPFPLDLVPRVISAPEWTRLERGITQRVKALECYLDDIYGDQEILRDGVIPRRLVTSCEHFHRQAVGIVPPNGVRIHVAGIDLIRDHRGDFRVLEDNLRSPSGVSYVMENRRTMARVFPNLFATHRVRAVDDYASHLLRALRNSAATNEADPTVVVLTPGVYNSAYFEHSLLARQMGVELVEGRDLFCRDNQVYMRTTEGERQVDVIYRRIDDAFLDPLQFRADSVLGVAGLVNAARAGNVVLSSAIGNGVGDDKLVYTYVPTMIEYYLHEKPLLANVETLRCWLDDEREEVLDRIRELVLKPVEGSGGYGIVFGPEASQAELAAVSQKIRDDPRSWIAQPMMELSTVPTRIEGTLAPRYVDLRPFAVNDGNEVWVLPGGLTRVALVEGSRVVNSSQGGGSKDTWVLAPRASAAARELGAAQIVRSLPQPLCDPTVDASGYEPHDQQPQQQQQQQQQAFH
Prediction	CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHCCCCCHHHHHCCCCHHHHCCCCCCCCCEEEEEEEEEEEHCCCCCEEEEEEHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEHCCCCCCCHHHHHHHHHHHHCCEEEHCCCEEEHCCEEEEEHCCCCCEEEEEEEHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCEEEHCCCCCCCCCCHCCCCCHHHHHHHHHHHHHCCCCEEEEHCCCCCCCCEEHCCEEEEEEEEEEEEEEEHCCEEEEHCCEEEEEHCCCCCEEEHCCCCCCCCCEEEHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHC
Conf.Score	98878887777887888876677887588888888877656679999898999999999979999999999999999999898788589888766576655579999999999999999999999999859975654489998998759875565468888998589999999998799979999875799875889999999999999999987798665589999999999985788899889996899998578999999999898788577579999999998689986689999857856668655789887785799999998996998787677656865789999999998599765678887668999999999998776456767898887775577799999999999999878657987577887675888998887578889999986996899777578875899977887478876455899679988877777776655567888887556554454578899999999999869
	H:Helix; S:Strand; C:Coil

Predicted Solvent Accessibility

Sequence	20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| MRRVSLPNQLNETRRRSPTRGERIFGGYNTSDVYAMAFDEMFDAQGIVRGPYKGIYAELAPSDASELKARADALGRAFIDQGITFSLSGQERPFPLDLVPRVISAPEWTRLERGITQRVKALECYLDDIYGDQEILRDGVIPRRLVTSCEHFHRQAVGIVPPNGVRIHVAGIDLIRDHRGDFRVLEDNLRSPSGVSYVMENRRTMARVFPNLFATHRVRAVDDYASHLLRALRNSAATNEADPTVVVLTPGVYNSAYFEHSLLARQMGVELVEGRDLFCRDNQVYMRTTEGERQVDVIYRRIDDAFLDPLQFRADSVLGVAGLVNAARAGNVVLSSAIGNGVGDDKLVYTYVPTMIEYYLHEKPLLANVETLRCWLDDEREEVLDRIRELVLKPVEGSGGYGIVFGPEASQAELAAVSQKIRDDPRSWIAQPMMELSTVPTRIEGTLAPRYVDLRPFAVNDGNEVWVLPGGLTRVALVEGSRVVNSSQGGGSKDTWVLAPRASAAARELGAAQIVRSLPQPLCDPTVDASGYEPHDQQPQQQQQQQQQAFH
Prediction	65434236426536445354243005204256233100000004734114002300510471337204401530342036220102133561100000000003471053005003000300210030013523003222003300240620020024040241010000000001066030000000000000000001003001400220056240330350042014003400365362000000010110000010020043030300104202033210000026333100000000234100002036501000000010023110000000101001120000001300430244511162041010134710530162054000000242211000002503550044015203732240000130400100002653020110000000002573010000000000256422000013100000000013634535442444532443645021200110000000000011001111137
	Values range from 0 (buried residue) to 8 (highly exposed residue)

Predicted Normalized B-facotr

(B-factor is a value to indicate the extent of the inherent thermal mobility of residues/atoms in proteins. In I-TASSER, this value is deduced from threading template proteins from the PDB in combination with the sequence profiles derived from sequence databases. The reported B-factor profile in the figure below corresponds to the normalized B-factor of the target protein, defined by B=(B'-u)/s, where B' is the raw B-factor value, u and s are respectively the mean and standard deviation of the raw B-factors along the sequence. (Click here to read more about predicted normalized B-factor)

Top 10 threading templates used by I-TASSER

Rank

PDB
Hit

Iden1

Iden2

Cov

Norm.
Zscore

Download
Align.

                  20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280                 300                 320                 340                 360                 380                 400                 420                 440                 460                 480                 500                 520                 540

                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |

Sec.Str
Seq

CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHCCCCCHHHHHCCCCHHHHCCCCCCCCCEEEEEEEEEEEHCCCCCEEEEEEHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEHCCCCCCCHHHHHHHHHHHHCCEEEHCCCEEEHCCEEEEEHCCCCCEEEEEEEHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCEEEHCCCCCCCCCCHCCCCCHHHHHHHHHHHHHCCCCEEEEHCCCCCCCCEEHCCEEEEEEEEEEEEEEEHCCEEEEHCCEEEEEHCCCCCEEEHCCCCCCCCCEEEHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHC
MRRVSLPNQLNETRRRSPTRGERIFGGYNTSDVYAMAFDEMFDAQGIVRGPYKGIYAELAPSDASELKARADALGRAFIDQGITFSLSGQERPFPLDLVPRVISAPEWTRLERGITQRVKALECYLDDIYGDQEILRDGVIPRRLVTSCEHFHRQAVGIVPPNGVRIHVAGIDLIRDHRGDFRVLEDNLRSPSGVSYVMENRRTMARVFPNLFATHRVRAVDDYASHLLRALRNSAATNEADPTVVVLTPGVYNSAYFEHSLLARQMGVELVEGRDLFCRDNQVYMRTTEGERQVDVIYRRIDDAFLDPLQFRADSVLGVAGLVNAARAGNVVLSSAIGNGVGDDKLVYTYVPTMIEYYLHEKPLLANVETLRCWLDDEREEVLDRIRELVLKPVEGSGGYGIVFGPEASQAELAAVSQKIRDDPRSWIAQPMMELSTVPTRIEGTLAPRYVDLRPFAVNDGNEVWVLPGGLTRVALVEGSRVVNSSQGGGSKDTWVLAPRASAAARELGAAQIVRSLPQPLCDPTVDASGYEPHDQQPQQQQQQQQQAFH

3n6xA

0.51

0.40

0.79

2.97

MUSTER

----------------------------------TKPFDEFL-QDEVIRPIYAEYAAWLQDVPHQQLESKRQEAELLFRRVGITF-------LIPFDVVPRILSASEWARLSDGAIQRVKALNFLHDVY--DQEIIKAGIVPSSILA-NAQYRP-EFGVDVPGGVYAHIAGVDLVRTGENDFYVLEDNLRTPSGVS-YLENRK---RLFPELFRRYPVAPVEHYPQVLLNNLRAVAQAGVHEPTVVLLTPGAYNSAYFEHAFIAQQ--IELVEGQDLFVRNNAVY--TTEGPKRVDVIYRRIDDDFIDPLSFRPDS-LGVPGLLSVYRNGGVTLANAVGTGVADDKDTYIYVPE-IRFYLGEEPILSNVPTYQLSKADDLKYVLDNLAELVVKEVQG------LVGPAASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSGKT-VSLVPGALCRVALREGSLVVNSSQGGGTKDTWILK----------------------------------------------------

3n6xA

0.50

0.40

0.80

9.41

dPPAS

----------------------------------TKPFDEF-LQDEVIRPIYAEYAAWLQDVPHQQLESKRQEAELLFRRVGITF-------LIPFDVVPRILSASEWARLSDGAIQRVKALNFLHDVYH-DQEIIKAGIVPSSILANAQY--RPEFGVDVPGGVYAHIAGVDLVRTGENDFYVLEDNLRTPSGVSYLENRK----RLFPELFRRYPVAPVEHYPQVLLNNLRAVAQAGVHEPTVVLLTPGAYNSAYFEHAFIAQQG-IELVEGQDLFVRNNAVYR-TTEGPKRVDVIYRRIDDDFIDPLSFRPDS-LGVPGLLSVYRNGGVTLANAVGTGVADDKDTYIYVPE-IRFYLGEEPILSNVPTYQLSKADDLKYVLDNLAELVVKEVQG------LVGPAASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSGKT-VSLVPGALCRVALREGSLVVNSSQGGGTKDTWILK----------------------------------------------------

3n6xA

0.51

0.40

0.79

8.50

wdPPAS

----------------------------------TKPFDEFLQ-DEVIRPIYAEYAAWLQDVPHQQLESKRQEAELLFRRVGITF-------LIPFDVVPRILSASEWARLSDGAIQRVKALNFLHDVY--DQEIIKAGIVPSSILANAQ--YRPEFGVDVPGGVYAHIAGVDLVRTGENDFYVLEDNLRTPSGVSYLENRK----RLFPELFRRYPVAPVEHYPQVLLNNLRAVAQAGVHEPTVVLLTPGAYNSAYFEHAFIAQQ--IELVEGQDLFVRNNAVYR-TTEGPKRVDVIYRRIDDDFIDPLSFRPDS-LGVPGLLSVYRNGGVTLANAVGTGVADDKDTYIYVPE-IRFYLGEEPILSNVPTYQLSKADDLKYVLDNLAELVVKEVQG------LVGPAASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSGKT-VSLVPGALCRVALREGSLVVNSSQGGGTKDTWILK----------------------------------------------------

3n6xA

0.51

0.40

0.79

3.28

wMUSTER

-----------------------------------KPFDEFL-QDEVIRPIYAEYAAWLQDVPHQQLESKRQEAELLFRRVGITF-------LIPFDVVPRILSASEWARLSDGAIQRVKALNFLHDVYH-DQEIIKAGIVPSSILA-NAQY-RPEFGVDVPGGVYAHIAGVDLVRTGENDFYVLEDNLRTPSGVSYLENRK----RLFPELFRRYPVAPVEHYPQVLLNNLRAVAQAGVHEPTVVLLTPGAYNSAYFEHAFIAQQ--IELVEGQDLFVRNNAVYR-TTEGPKRVDVIYRRIDDDFIDPLSFRPDS-LGVPGLLSVYRNGGVTLANAVGTGVADDKDTYIYVPE-IRFYLGEEPILSNVPTYQLSKADDLKYVLDNLAELVVKEVQG------LVGPAASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSGKT-VSLVPGALCRVALREGSLVVNSSQGGGTKDTWILK----------------------------------------------------

3n6xA

0.51

0.40

0.79

5.03

wPPAS

----------------------------------TKPFDEFLQ-DEVIRPIYAEYAAWLQDVPHQQLESKRQEAELLFRRVGITF-------LIPFDVVPRILSASEWARLSDGAIQRVKALNFLHDVY--DQEIIKAGIVPSSILA-NAQY-RPEFGVDVPGGVYAHIAGVDLVRTGENDFYVLEDNLRTPSGVSYLENRK----RLFPELFRRYPVAPVEHYPQVLLNNLRAVAQAGVHEPTVVLLTPGAYNSAYFEHAFIAQQ--IELVEGQDLFVRNNAVYR-TTEGPKRVDVIYRRIDDDFIDPLSFRPDS-LGVPGLLSVYRNGGVTLANAVGTGVADDKDTYIYVPE-IRFYLGEEPILSNVPTYQLSKADDLKYVLDNLAELVVKEVQG------LVGPAASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSGKT-VSLVPGALCRVALREGSLVVNSSQGGGTKDTWILK----------------------------------------------------

3n6xA

0.51

0.40

0.80

16.33

dPPAS2

----------------------------------TKPFDEFL-QDEVIRPIYAEYAAWLQDVPHQQLESKRQEAELLFRRVGITF-------LIPFDVVPRILSASEWARLSDGAIQRVKALNFLHDVYH-DQEIIKAGIVPSSILANAQY--RPEFGVDVPGGVYAHIAGVDLVRTGENDFYVLEDNLRTPSGVS-YLENR---KRLFPELFRRYPVAPVEHYPQVLLNNLRAVAQAGVHEPTVVLLTPGAYNSAYFEHAFIAQQG-IELVEGQDLFVRNNAVYR-TTEGPKRVDVIYRRIDDDFIDPLSFRPDS-LGVPGLLSVYRNGGVTLANAVGTGVADDKDTYIYVPE-IRFYLGEEPILSNVPTYQLSKADDLKYVLDNLAELVVKEVQG------LVGPAASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSG-KTVSLVPGALCRVALREGSLVVNSSQGGGTKDTWILK----------------------------------------------------

3n6xA

0.51

0.40

0.79

4.90

PPAS

----------------------------------TKPFDEFLQ-DEVIRPIYAEYAAWLQDVPHQQLESKRQEAELLFRRVGITF-------LIPFDVVPRILSASEWARLSDGAIQRVKALNFLHDVY--DQEIIKAGIVPSSILA-NAQY-RPEFGVDVPGGVYAHIAGVDLVRTGENDFYVLEDNLRTPSGVS-YLENR---KRLFPELFRRYPVAPVEHYPQVLLNNLRAVAQAGVHEPTVVLLTPGAYNSAYFEHAFIAQQ--IELVEGQDLFVRNNAVYR-TTEGPKRVDVIYRRIDDDFIDPLSFRPDS-LGVPGLLSVYRNGGVTLANAVGTGVADDKDTYIYVPE-IRFYLGEEPILSNVPTYQLSKADDLKYVLDNLAELVVKEVQG------LVGPAASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSGKT-VSLVPGALCRVALREGSLVVNSSQGGGTKDTWILK----------------------------------------------------

3n6xA

0.51

0.40

0.80

10.57

Env-PPAS

----------------------------------TKPFDEFLQ-DEVIRPIYAEYAAWLQDVPHQQLESKRQEAELLFRRVGITF-------LIPFDVVPRILSASEWARLSDGAIQRVKALNFLHDVYH-DQEIIKAGIVPSSILA-NAQY-RPEFGVDVPGGVYAHIAGVDLVRTGENDFYVLEDNLRTPSGVS-YLENR---KRLFPELFRRYPVAPVEHYPQVLLNNLRAVAQAGVHEPTVVLLTPGAYNSAYFEHAFIAQQG-IELVEGQDLFVRNNAVYR-TTEGPKRVDVIYRRIDDDFIDPLSFRPDS-LGVPGLLSVYRNGGVTLANAVGTGVADDKDTYIYVPE-IRFYLGEEPILSNVPTYQLSKADDLKYVLDNLAELVVKEVQG------LVGPAASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSG-KTVSLVPGALCRVALREGSLVVNSSQGGGTKDTWILK----------------------------------------------------

3n6xA1

0.52

0.36

0.68

2.36

MUSTER

----------------------------------TKPFDEFL-QDEVIRPIYAEYAAWLQDVPHQQLESKRQEAELLFRRVGITF-------LIPFDVVPRILSASEWARLSDGAIQRVKALNFLHDVY--DQEIIKAGIVPSSILA-NAQYRP-EFGVDVPGGVYAHIAGVDLVRTGENDFYVLEDNLRTPSGVS-YLENRK---RLFPELFRRYPVAPVEHYPQVLLNNLRAVAQAGVHEPTVVLLTPGAYNSAYFEHAFIAQQ--IELVEGQDLFVRNNAVY--TTEGPKRVDVIYRRIDDDFIDPLSFRPDS-LGVPGLLSVYRNGGVTLANAVGTGVADDKDTYIYVPE-IRFYLGEEPILSNA------------------------------------------------------------------LSTCPTLVETGIAPRHVDLRPFVLSGKT-VSLVPGALCRVALREGSLVVNSSQGGGTKDTWILK----------------------------------------------------

3n6xA1

0.51

0.35

0.69

7.40

dPPAS

----------------------------------TKPFDEF-LQDEVIRPIYAEYAAWLQDVPHQQLESKRQEAELLFRRVGITF-------LIPFDVVPRILSASEWARLSDGAIQRVKALNFLHDVYH-DQEIIKAGIVPSSILANAQY--RPEFGVDVPGGVYAHIAGVDLVRTGENDFYVLEDNLRTPSGVSYLENRK----RLFPELFRRYPVAPVEHYPQVLLNNLRAVAQAGVHEPTVVLLTPGAYNSAYFEHAFIAQQG-IELVEGQDLFVRNNAVYR-TTEGPKRVDVIYRRIDDDFIDPLSFRPDS-LGVPGLLSVYRNGGVTLANAVGTGVADDKDTYIYVPE-IRFYLGEEPILSNALS------------------------------------------------------------------TCPTLVETGIAPRHVDLRPFVLSGKT-VSLVPGALCRVALREGSLVVNSSQGGGTKDTWILK----------------------------------------------------

(a)	Iden1 is the number of template residues identical to query divided by number of aligned residues.
(b)	Iden2 is the number of template residues identical to query divided by query sequence length.
(c)	Cov is equal the number of aligned template residues divided by query sequence length.
(d)	Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment.
(e)	Download Align. list the threading program used to identify the template provide the 3D structure of aligned regions of threading templates.

Top 2 final models predicted by I-TASSER

(For each target, I-TASSER simulations generate a large ensemble of structural conformations, called decoys. To select the final models, I-TASSER uses the SPICKER program to cluster all the decoys based on the pair-wise structure similarity, and reports up to five models which corresponds to the five largest structure clusters. The confidence of each model is quantitatively measured by C-score that is calculated based on the significance of threading template alignments and the convergence parameters of the structure assembly simulations. C-score is typically in the range of [-5, 2], where a C-score of higher value signifies a model with a high confidence and vice-versa. TM-score and RMSD are estimated based on C-score and protein length following the correlation observed between these qualities. Since the top 5 models are ranked by the cluster size, it is possible that the lower-rank models have a higher C-score in rare cases. Although the first model has a better quality in most cases, it is also possible that the lower-rank models have a better quality than the higher-rank models as seen in our benchmark tests. If the I-TASSER simulations converge, it is possible to have less than 5 clusters generated. This is usually an indication that the models have a good quality because of the converged simulations.)

More about C-score

Local structure accuracy of first model

Download Model 1

C-score=-0.13

Estimated TM-score = 0.70±0.12

Estimated RMSD = 7.8±4.4Å

Download Model 2

C-score=-0.22

Proteins structureally close to the target in PDB (as identified by TM-align

(After the structure assembly simulation, I-TASSER uses the TM-align structural alignment program to match the first I-TASSER model to all structures in the PDB library. This section reports the top 10 proteins from the PDB that have the closest structural similarity, i.e. the highest TM-score, to the predicted I-TASSER model. Due to the structural similarity, these proteins often have similar function to the target. However, users are encouraged to use the data in the next section 'Predicted function using COACH' to infer the function of the target protein, since COACH has been extensively trained to derive biological functions from multi-source of sequence and structure features which has on average a higher accuracy than the function annotations derived only from the global structure comparison.)

Top 10 Identified stuctural analogs in PDB

Rank	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov
1	3n6xA	0.788	0.92	0.510	0.797
2	3kalA	0.611	4.57	0.106	0.748
3	2hgsA	0.603	4.60	0.101	0.746
4	1m0wA	0.603	4.51	0.143	0.737
5	2wyoA	0.592	4.87	0.104	0.742
6	2vpsA	0.527	4.64	0.102	0.646
7	2iobB2	0.515	4.51	0.134	0.633
8	4wd9A1	0.468	5.70	0.047	0.626
9	5ehkA	0.463	6.05	0.053	0.632
10	3k1tA	0.435	5.33	0.089	0.564

(a)	Query structure is shown in cartoon, while the structural analog is displayed using backbone trace.
(b)	Ranking of proteins is based on TM-score of the structural alignment between the query structure and known structures in the PDB library.
(c)	RMSD^a is the RMSD between residues that are structurally aligned by TM-align.
(d)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(e)	Cov represents the coverage of the alignment by TM-align and is equal to the number of structurally aligned residues divided by length of the query protein.

Predicted function using COACH

(This section reports biological annotations of the target protein by COACH based on the I-TASSER structure prediction. COACH is a meta-server approach that combines multiple function annotation results from the COFACTOR, TM-SITE and S-SITE programs.)

Ligand binding sites

Rank	C-score	Cluster size	PDB Hit	Lig Name	Download Complex	Ligand Binding Site Residues
1	0.15	10	2io8A	ADP	Rep, Mult	173,185,186,346,392,394,398,400,431,432,433,434,436,453,482,483,484
2	0.14	9	2hgsA	MG	Rep, Mult	186,188,398
3	0.03	2	3kalA	SO4	Rep, Mult	171,186,188,398,474
4	0.02	1	1y10C	CA	Rep, Mult	274,276
5	0.02	1	3dr2B	CA	Rep, Mult	301,308
6	0.02	1	2ioaA	GGA	Rep, Mult	171,173,186,188,191,192,193,250,256,302,303,398,474,491
7	0.02	1	3fysA	BR	Rep, Mult	308,323,346
8	0.02	1	2b0qA	MG	Rep, Mult	453,494
9	0.02	1	3c46A	2HP	Rep, Mult	327,331,332,333,334
10	0.02	1	2io9B	GSH	Rep, Mult	171,188,193,194,197,259,399,474,492
11	0.02	1	3kakA	3GC	Rep, Mult	171,190,191,192,193,250,254,256,301
12	0.02	1	3e27A	MG	Rep, Mult	276,300
13	0.02	1	2io7A	MG	Rep, Mult	173,186
14	0.02	1	4ewlB	GOL	Rep, Mult	458,470,471

	Download the all possible binding ligands and detailed prediction summary.
	Download the templates clustering results.
(a)	C-score is the confidence score of the prediction. C-score ranges [0-1], where a higher score indicates a more reliable prediction.
(b)	Cluster size is the total number of templates in a cluster.
(c)	Lig Name is name of possible binding ligand. Click the name to view its information in the BioLiP database.
(d)	Rep is a single complex structure with the most representative ligand in the cluster, i.e., the one listed in the Lig Name column. Mult is the complex structures with all potential binding ligands in the cluster.

Enzyme Commission (EC) numbers and active sites

Rank	Cscore^EC	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov	EC Number	Active Site Residues
1	0.315	3kakB	0.554	4.81	0.107	0.688	6.3.2.3	193,474
2	0.313	3kalA	0.611	4.57	0.106	0.748	6.3.2.3	193,399,474
3	0.267	2hgsA	0.603	4.60	0.101	0.746	6.3.2.3	193,400,474
4	0.060	3c46B	0.368	7.54	0.051	0.594	2.7.7.6	307
5	0.060	1ogyA	0.322	7.40	0.038	0.508	1.7.99.4	NA
6	0.060	1fdiA	0.320	7.50	0.033	0.510	1.2.1.2	NA
7	0.060	1m0wA	0.603	4.51	0.143	0.737	6.3.2.3	474
8	0.060	1jqnA	0.343	8.07	0.063	0.588	4.1.1.31	NA
9	0.060	3gidB	0.315	5.69	0.072	0.421	6.4.1.2,6.3.4.14	NA
10	0.060	2nyaF	0.321	7.33	0.041	0.503	1.7.99.4	NA
11	0.060	2v5aB	0.323	6.00	0.113	0.454	6.3.4.14	194,232,260
12	0.060	2wyoA	0.592	4.87	0.104	0.742	6.3.2.3	186,369
13	0.060	1h0hA	0.345	7.84	0.048	0.575	1.2.1.2	NA
14	0.060	1bxrA	0.334	6.19	0.071	0.475	6.3.5.5	NA
15	0.060	1gsaA	0.330	4.63	0.158	0.406	6.3.2.3	233
16	0.060	3i12A	0.323	5.11	0.085	0.412	6.3.2.4	NA
17	0.060	2yyaB	0.324	5.74	0.085	0.437	6.3.4.13	NA
18	0.060	2wyhA	0.329	7.34	0.044	0.515	3.2.1.24	456
19	0.060	1w93A	0.329	6.39	0.072	0.472	6.3.4.14,6.4.1.2	NA
20	0.060	3lp8A	0.326	5.64	0.073	0.437	6.3.4.13	193
21	0.060	2pffD	0.364	7.61	0.040	0.586	2.3.1.86	NA
22	0.060	1kqfA	0.341	7.81	0.034	0.559	1.2.1.2	NA

(a)	Cscore^EC is the confidence score for the EC number prediction. Cscore^EC values range in between [0-1]; where a higher score indicates a more reliable EC number prediction.
(b)	TM-score is a measure of global structural similarity between query and template protein.
(c)	RMSD^a is the RMSD between residues that are structurally aligned by TM-align.
(d)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(e)	Cov represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein.

Gene Ontology (GO) terms

Rank	Cscore^GO	TM-score	RMSD^a	IDEN^a	Cov	PDB Hit	Associated GO Terms
Homologous GO templates in PDB
0	0.23	0.603	4.60	0.10	0.75	2hgsA	GO:0000166 GO:0000287 GO:0004363 GO:0005524 GO:0005829 GO:0006520 GO:0006750 GO:0006979 GO:0007399 GO:0007568 GO:0009410 GO:0016594 GO:0016874 GO:0031667 GO:0034612 GO:0042277 GO:0042803 GO:0043200 GO:0043295 GO:0046686 GO:0046872 GO:0070062
1	0.18	0.603	4.51	0.14	0.74	1m0wA	GO:0000166 GO:0000287 GO:0004363 GO:0005524 GO:0005622 GO:0006750 GO:0016874 GO:0042803 GO:0043295 GO:0046872
2	0.07	0.611	4.57	0.11	0.75	3kalA	GO:0000166 GO:0000287 GO:0004363 GO:0005524 GO:0006750 GO:0016874 GO:0042803 GO:0043295 GO:0046872
3	0.07	0.592	4.87	0.10	0.74	2wyoA	GO:0000166 GO:0000287 GO:0004363 GO:0005524 GO:0006750 GO:0016874 GO:0042803 GO:0043295 GO:0046872
4	0.07	0.554	4.81	0.11	0.69	3kakB	GO:0000166 GO:0000287 GO:0004363 GO:0005524 GO:0006750 GO:0016874 GO:0042803 GO:0043295 GO:0046872
5	0.07	0.565	4.98	0.10	0.71	2wyoC	GO:0000166 GO:0000287 GO:0004363 GO:0005524 GO:0006750 GO:0016874 GO:0042803 GO:0043295 GO:0046872
6	0.06	0.251	8.16	0.03	0.43	4xpqA	GO:0003824 GO:0004553 GO:0005975 GO:0008152 GO:0016787 GO:0016798 GO:0030246
7	0.06	0.249	8.27	0.03	0.44	1fwxA	GO:0004129 GO:0005507 GO:0005509 GO:0016020 GO:0016491 GO:0019333 GO:0042597 GO:0046872 GO:0050304 GO:0055114 GO:1902600
8	0.06	0.217	6.15	0.05	0.31	1afwB	GO:0003729 GO:0003824 GO:0003988 GO:0005758 GO:0005777 GO:0005782 GO:0006629 GO:0006631 GO:0006635 GO:0008152 GO:0016740 GO:0016746 GO:0016747
9	0.06	0.222	6.02	0.05	0.31	1pv9A	GO:0005737 GO:0006508 GO:0008233 GO:0008237 GO:0016787 GO:0016805 GO:0046872 GO:0102009
10	0.06	0.212	6.08	0.06	0.30	1pv9B	GO:0005737 GO:0006508 GO:0008233 GO:0008237 GO:0016787 GO:0016805 GO:0046872 GO:0102009
11	0.06	0.198	6.74	0.05	0.30	4q05A	GO:0008152 GO:0016787
12	0.06	0.190	7.13	0.04	0.30	4on1A	GO:0004222 GO:0006508 GO:0008233 GO:0008237 GO:0008270 GO:0031012 GO:0046872
13	0.06	0.211	6.63	0.07	0.31	3a3uA	GO:0009234 GO:0016829 GO:0016830
14	0.06	0.191	6.48	0.08	0.28	5c8dE	GO:0003677 GO:0006355 GO:0031419 GO:0046872
15	0.06	0.194	6.66	0.07	0.29	5iz3A	GO:0005975 GO:0016311 GO:0016787 GO:0042132 GO:0042578
16	0.06	0.196	6.67	0.07	0.30	2y4rA	GO:0003824 GO:0004084 GO:0006532 GO:0008152 GO:0008696 GO:0009098 GO:0009099 GO:0016829 GO:0030170 GO:0046656
17	0.06	0.171	5.91	0.03	0.24	1u3iA	GO:0004364 GO:0016740
18	0.06	0.166	5.72	0.06	0.23	3dbjA	GO:0015979 GO:0018298 GO:0030089 GO:0055114

Consensus prediction of GO terms

Molecular Function	GO:0005524	GO:0043295	GO:0000287	GO:0042803	GO:0004363	GO:0016597
GO-Score	0.49	0.49	0.49	0.49	0.49	0.47
Biological Processes	GO:0006750	GO:0006950	GO:0010243	GO:0010038	GO:0034097	GO:0001101	GO:0019752	GO:0009991	GO:0048731	GO:1901700	GO:0044238
GO-Score	0.49	0.47	0.47	0.47	0.47	0.47	0.47	0.47	0.47	0.47	0.41
Cellular Component	GO:1903561	GO:0031988	GO:0044444
GO-Score	0.47	0.47	0.47

(a)	Cscore^GO is a combined measure for evaluating global and local similarity between query and template protein. It's range is [0-1] and higher values indicate more confident predictions.
(b)	TM-score is a measure of global structural similarity between query and template protein.
(c)	RMSD^a is the RMSD between residues that are structurally aligned by TM-align.
(d)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(e)	Cov represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein.
(f)	The second table shows a consensus GO terms amongst the top scoring templates. The GO-Score associated with each prediction is defined as the average weight of the GO term, where the weights are assigned based on Cscore^GO of the template.

[Click on result.tar.bz2 to download the tarball file including all modelling results listed on this page]

Please cite the following articles when you use the I-TASSER server:
1.	J Yang, R Yan, A Roy, D Xu, J Poisson, Y Zhang. The I-TASSER Suite: Protein structure and function prediction. Nature Methods, 12: 7-8, 2015.
2.	J Yang, Y Zhang. I-TASSER server: new development for protein structure and function predictions, Nucleic Acids Research, 43: W174-W181, 2015.
3.	A Roy, A Kucukural, Y Zhang. I-TASSER: a unified platform for automated protein structure and function prediction. Nature Protocols, 5: 725-738, 2010.
4.	Y Zhang. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics, 9: 40, 2008.