I-TASSER results

I-TASSER results for job id Rv2345

[Click on result.tar.bz2 to download the tarball file including all modelling results listed on this page]

Input Sequence in FASTA format

>protein (660 residues)
MRLVRLLGMVLTILAAGLLLGPPAGAQPPFRLSNYVTDNAGVLTSSGRTAVTAAVDRLYA
DRRIRLWVVYVENFSGQSALNWAQRTTRTSELGNYDALLAVATTGREYAFLVPSAMPGVS
EGQVDNVRRYQIEPALHDGDYSGAAVAAANGLNRSPSSSSRVVLLVTVGIIVIVVAVLLV
VMRHRNRRRRADELAAARRVDPTNVMALAAVPLQALDDLSRSMVVDVDNAVRTSTNELAL
AIEEFGERRTAPFTQAVNNAKAALSQAFTVRQQLDDNTPETPAQRRELLTRVIVSAAHAD
RELASQTEAFEKLRDLVINAPARLDLLTQQYVELTTRIGPTQQRLAELHTEFDAAAMTSI
AGNVTTATERLAFADRNISAARDLADQAVSGRQAGLVDAVRAAESALGQARALLDAVDSA
ATDIRHAVASLPAVVADIQTGIKRANQHLQQAQQPQTGRTGDLIAARDAAARALDRARGA
ADPLTAFDQLTKVDADLDRLLATLAEEQATADRLNRSLEQALFTAESRVRAVSEYIDTRR
GSIGPEARTRLAEAKRQLEAAHDRKSSNPTEAIAYANAASTLAAHAQSLANADVQSAQRA
YTRRGGNNAGAILGGIIIGDLLSGGTRGGLGGWIPTSFGGSSNAPGSSPDGGFLGGGGRF

Predicted Secondary Structure

Sequence	20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 620 640 660 \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| MRLVRLLGMVLTILAAGLLLGPPAGAQPPFRLSNYVTDNAGVLTSSGRTAVTAAVDRLYADRRIRLWVVYVENFSGQSALNWAQRTTRTSELGNYDALLAVATTGREYAFLVPSAMPGVSEGQVDNVRRYQIEPALHDGDYSGAAVAAANGLNRSPSSSSRVVLLVTVGIIVIVVAVLLVVMRHRNRRRRADELAAARRVDPTNVMALAAVPLQALDDLSRSMVVDVDNAVRTSTNELALAIEEFGERRTAPFTQAVNNAKAALSQAFTVRQQLDDNTPETPAQRRELLTRVIVSAAHADRELASQTEAFEKLRDLVINAPARLDLLTQQYVELTTRIGPTQQRLAELHTEFDAAAMTSIAGNVTTATERLAFADRNISAARDLADQAVSGRQAGLVDAVRAAESALGQARALLDAVDSAATDIRHAVASLPAVVADIQTGIKRANQHLQQAQQPQTGRTGDLIAARDAAARALDRARGAADPLTAFDQLTKVDADLDRLLATLAEEQATADRLNRSLEQALFTAESRVRAVSEYIDTRRGSIGPEARTRLAEAKRQLEAAHDRKSSNPTEAIAYANAASTLAAHAQSLANADVQSAQRAYTRRGGNNAGAILGGIIIGDLLSGGTRGGLGGWIPTSFGGSSNAPGSSPDGGFLGGGGRF
Prediction	CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEHCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEHCCCCEEEEHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Conf.Score	986458999999999998756677678987778875667888885679999999999999858679999977899999999999999996999875999998689779998688877678899999999987777655875677888888887667888765555544566777889999999999888899999888765566778888559999999999999999999999999999999999999999999999999999999999999998778779999999999999999999999999999999999999999999999999999999999999999999999769999999998999999999999999999999999999989999999999999999999999999999999999999999999999999999999999866788899999999999999999998665589999999999999999999999999999999999999999999999999999999999999999999999999999999999998699999999999999999999999999999999988765555567777777764678888878888877778888888888887766788889
	H:Helix; S:Strand; C:Coil

Predicted Solvent Accessibility

Sequence	20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 620 640 660 \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| MRLVRLLGMVLTILAAGLLLGPPAGAQPPFRLSNYVTDNAGVLTSSGRTAVTAAVDRLYADRRIRLWVVYVENFSGQSALNWAQRTTRTSELGNYDALLAVATTGREYAFLVPSAMPGVSEGQVDNVRRYQIEPALHDGDYSGAAVAAANGLNRSPSSSSRVVLLVTVGIIVIVVAVLLVVMRHRNRRRRADELAAARRVDPTNVMALAAVPLQALDDLSRSMVVDVDNAVRTSTNELALAIEEFGERRTAPFTQAVNNAKAALSQAFTVRQQLDDNTPETPAQRRELLTRVIVSAAHADRELASQTEAFEKLRDLVINAPARLDLLTQQYVELTTRIGPTQQRLAELHTEFDAAAMTSIAGNVTTATERLAFADRNISAARDLADQAVSGRQAGLVDAVRAAESALGQARALLDAVDSAATDIRHAVASLPAVVADIQTGIKRANQHLQQAQQPQTGRTGDLIAARDAAARALDRARGAADPLTAFDQLTKVDADLDRLLATLAEEQATADRLNRSLEQALFTAESRVRAVSEYIDTRRGSIGPEARTRLAEAKRQLEAAHDRKSSNPTEAIAYANAASTLAAHAQSLANADVQSAQRAYTRRGGNNAGAILGGIIIGDLLSGGTRGGLGGWIPTSFGGSSNAPGSSPDGGFLGGGGRF
Prediction	421000000000000000000010202324506430202022035632540451055037635010000002106445035003301643602320000000034220001023514423453044025440443047340331122115324444443432210100011101100000000123344445434434435445344234232540453045304402530451452042034412461044035205503531453242244145545534542441044015305523540451353055035305504530540453254045315503530440364145511440453254045205404530550353254444443430353044035115404511530450354045026404511540452054045325626544443444144134434433542554442240154045025404531551454355344335404511540452054045304434542355035304504531550464355434402530440452054036304510552444345433320000000000000022012132111111221234332433442221123334
	Values range from 0 (buried residue) to 8 (highly exposed residue)

Predicted Normalized B-facotr

(B-factor is a value to indicate the extent of the inherent thermal mobility of residues/atoms in proteins. In I-TASSER, this value is deduced from threading template proteins from the PDB in combination with the sequence profiles derived from sequence databases. The reported B-factor profile in the figure below corresponds to the normalized B-factor of the target protein, defined by B=(B'-u)/s, where B' is the raw B-factor value, u and s are respectively the mean and standard deviation of the raw B-factors along the sequence. (Click here to read more about predicted normalized B-factor)

Top 10 threading templates used by I-TASSER

Rank

PDB
Hit

Iden1

Iden2

Cov

Norm.
Zscore

Download
Align.

                  20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280                 300                 320                 340                 360                 380                 400                 420                 440                 460                 480                 500                 520                 540                 560                 580                 600                 620                 640                 660

                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |

Sec.Str
Seq

CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEHCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEHCCCCEEEEHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
MRLVRLLGMVLTILAAGLLLGPPAGAQPPFRLSNYVTDNAGVLTSSGRTAVTAAVDRLYADRRIRLWVVYVENFSGQSALNWAQRTTRTSELGNYDALLAVATTGREYAFLVPSAMPGVSEGQVDNVRRYQIEPALHDGDYSGAAVAAANGLNRSPSSSSRVVLLVTVGIIVIVVAVLLVVMRHRNRRRRADELAAARRVDPTNVMALAAVPLQALDDLSRSMVVDVDNAVRTSTNELALAIEEFGERRTAPFTQAVNNAKAALSQAFTVRQQLDDNTPETPAQRRELLTRVIVSAAHADRELASQTEAFEKLRDLVINAPARLDLLTQQYVELTTRIGPTQQRLAELHTEFDAAAMTSIAGNVTTATERLAFADRNISAARDLADQAVSGRQAGLVDAVRAAESALGQARALLDAVDSAATDIRHAVASLPAVVADIQTGIKRANQHLQQAQQPQTGRTGDLIAARDAAARALDRARGAADPLTAFDQLTKVDADLDRLLATLAEEQATADRLNRSLEQALFTAESRVRAVSEYIDTRRGSIGPEARTRLAEAKRQLEAAHDRKSSNPTEAIAYANAASTLAAHAQSLANADVQSAQRAYTRRGGNNAGAILGGIIIGDLLSGGTRGGLGGWIPTSFGGSSNAPGSSPDGGFLGGGGRF

4ui9O

0.12

0.11

0.95

1.40

MUSTER

DWVTPYKIAVLVLLSEMSRTGEGAVSLVERRQLLPLLQGPDITVSKLLKLIEESCPQLANSVQIRIKLMAEGELKDMEFDDLSDSFSGTEPEVHKTMILA--YTALQQYFQSDENKKPLSQKQAEFFLSQQASLLKNDETKALTPASLQKELNNLLKFNPDFAEAHYLSYLNNLRVVFSSTHSLLHYFDRLILTGAESKSNGEEGYGRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLSWLYVLGQKRSDSYVLLEHSVKKAVHFYLASLGIQSLVQQRAFAANKLMDALKDSDLLHWKHLSELIDISIAQKTAIWRLYGRSTMALQQAQMLLSNNTESFAVALCHLAELHAEQFAAASEVLKHLKERFPPSQHAQLWMLCDQKIQFDRAMNDYHLADSLVTGITALNSIEGVYRKAVVLQAQNQMSEAHKLLQKLLVHCQKLTEMVISVLLSVAELYWRSSSPTIALPMLLQALALSKEYQYLASETVLNLAFAQLILGIPEQALSLLHMAIEPILADILDKGRAMFLVAKCQVASAASYDQPKKAEALEAAIENLNEAKNYFAKVDERIRDVVYFQARLYHTLGKTQERNRCAMLFRQLHQELPSVPLINHL------------------------------

4ui9O

0.08

0.07

0.92

1.13

dPPAS

MAEGELKDMEQFFDDLSDSFSGTEPEVHKTSVVGLFLRHMILLSFSQVFKLYTALQQYFQSDENK------KPLSQKQAEFFLSQQASLLKNDETK-------ALTPASLQKELNNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAEGEEGYGRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLSWLYVLGQKRSDSYVLLEHSVKKAVHFGLPYLASLGIQSLVQQRAFAGKTANKLMDALKDSDLLHWKHSLSELIDISIAQKTAIWRLYGRSTMALQQAQMLLSMNSLEQQNNTESFAVALCHLAELHAEQGCFAAASEVLKHLKERFPPNSQHAQLWMLCDQKIQFDRAMNDGKYHLADSLVTGITALNSIEGVYRKAVVLQAQNQMSEAHKLLQKLLVHCQKLKNTEMVISVLLSVAELYWRSSSPTIALPMLLQALALSKEYRLQYLASETVLNLAFAQLILGIPEQALSLLHMAIEPILADGAILDKGRAMFLVAKCQVASAASYDQPKKAEALEAAIENLNEAKNYFAKVDCK-------------ERIRDVVYFQARLYHTLGKTQERNRCAMLFRQLHQELPSVPLINHL------------------------------

5j1iA

0.10

0.05

0.52

1.32

wdPPAS

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SRCQRCISELKDIRLQLEACETRTVHRLRLP-KEPARECAQRIAEQQKAQAEVEGLGKG-VARLSAEAEKVLAAAPTLRSELELTLGKLEQVRSLSAIYLEKLKTISLVIRGTQGAEEVLRAHEEQLKEA---QAVPATLPELEATKASLKKLRAQAEAQQPTFDALRDELRGAQEVGERLQQRH--ERDVEVERWRERVAQLLERWQAVLAQTDVRQRELEQLGRQLRYYRESADPLGAWLQDARRRQEQIQAMD------SQAVREQLRQEQALLEEIERHGEKVEECQRFAKQYINAIKDYELQLVTYKAQLEKVQ-SGSESVIQEYVDLRTHYSELTTLTSQ-YIKFISET------------------------------------------------------------------------------------

5fvmA

0.10

0.95

1.65

wMUSTER

EPSTSTIESLITINNQL-----LKHAQQHHDLQLKETDDA--LNAYNKREAEVTIGKMRSLHALGEW--QLSELSSEVKRAIAPLAAGAA-LAQWDRV---------------EQYIEVMKPQSPDKAFFDAILCLHRNNFEKAAEHIFSARDLLVTEMSALYNRA--YGVVVRTQMVAELEEIIQYKKLPQGSERRAMIRKTWNKRLLGCQVWQRVLKVRSLVIKPKQDMKVWIKFANLCRKSGRLGLAQKTLNTLLEAPPPVVYAQLKYMWATGSQKEALNHLISFTSRMAHDLG--QHHIEDYTKLLARCFLKQGEWRVSLQP-LENPDAILGSYLLATHFDYKAWHNWALANFEVTSSLTQRIKDDKVP-NANDNFPPELVQRHVVPAIKGFFHSIALSQSSLQDTLRLLTLWFKFGGI-PEAAQAMHEGFGLIDNWLEVIPQLISRIHQPNQTVSRSLLSLLADLGKAHPQALVYPLTVAIKSDSVSRQRAALSIIDKMRMHSPKLVNQAELVSDELIRVAVWHELWYEGLEDASRQFFGE--HNTEKMFATLEPLHEMLKRGPETLISFQNSFGRDLNDAYEWVLNYKRTKDINNLNQAWDIYYNVFRRISRKLPQLQTLDLQHVSPKLSAAKDLELAVPGTYHAGIVR--THF

5j1iA

0.10

0.05

0.52

1.89

wPPAS

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SRCQRCISELKDIRLQLEACETRTVHRLRLPLDKPARECAQRIAEQQKAQAEVEGLGKG-VARLSAEAEKVLAAAPTLRSELELTLGKLEQVRSLSAIYLEKLKTISLVIRGTQGAEEVLRAHEEQLKEA---QAVPATLPELEATKASLKKLRAQAEAQQPTFDALRDELRGAQEVGERLQQRH--ERDVEVERWRERVAQLLERWQAVLAQTDVRQRELEQLGRQLRYYRESADPLGAWLQDARRRQEQIQAM-------SQAVREQLRQEQALLEEIERHGEKVEECQRFAKQYINAIKDYELQLVTYKAQLEKVQ-SGSESVIQEYVDLRTHYSELTTLTSQ-YIKFISET------------------------------------------------------------------------------------

5j1iA

0.08

0.04

0.52

1.75

dPPAS2

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SRCQRCISELKDIRLQLEACETRTVHRLRLPLDKEPARECAQRIAEQQKAQAEVEGLGKGVARLSAEAEKVLALSPA-APTLRSELELTLGKLEQVRSLSAIYLEKLKTISLVIRGTQGAEEVLRAHEEQLKEAATLPELEATKASLKKLRAQAEAQQPTFDALRDELRGAQEVGERLQQRHGERDV-EVERWRERVAQLLERWQAVLAQTDVRQRELEQLGRQLRYYRESADPLGAWLQDARRRQEQIQAMSQAVREQLRQEQALLEEIERHGEKVEECQRFAKQYINAIKDYELQLVTYKAQLEKVQSGSESVIQEYVDLRTHYSELTTLTSQYIKFISET------------------------------------------------------------------------------------------------------------------

4ui9O

0.09

0.08

0.92

1.74

PPAS

EGAVSLVERRRLNQQLLPLLQGPDITESCPQLANSVQIRIKLMAEGELKDMEQFFDDLSDSFSGTLFLMILASFSQVALQQYFQSDENKKPLSQKQAEFFLSQQASLLKNDETKALTPAFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAEGEEGYGRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLSWLYVLGQKRSDSYVLLEHSVKKAVHFPYLASLGIQSLVQQRAFAGKTANKLMDALKDSDLLHWKHSLSELIDISIAQKTAIWRLYGRSTMALQQAQMLLSMNSLEQQNNTESFAVALCHLAELHAEQGCFAAASEVLKHLKERFPPNSQHAQLWMLCDQKIQFDRAMNDGKYHLADSLVTGITALNSIEGVYRKAVVLQAQ------QMSEAHKLLQKLLVHCQKLKNTEMVISVLLSVAELYWRSSSPTIALPMLLQALALSKEYRLQYLASETVLNLAFAQLILGIPEQALSLLHMAIEPILAILDKGRAMFLVAKCQVASAASYDQPKKAEALEAAIENLNEAKNYFAKVDERIRDVVYFQARLYHTLTQERNRCAMLFRQLHQELPSVPLINHL-----------------------------------------------

2kptA

0.25

0.06

0.22

2.09

Env-PPAS

-------------------TETYVLAESPEFYQDNVTDYTGQISSSDITNIQAAIDDVKASEQKVIFVVFLSSFDGVDPETWTQQALQANGGG-NVLIYALAPEERQYGIQGGTQWT----DAELDAANNAAFQALSQEDWAGSALALAESVGSSSSSSSGSSSLEHHHHHH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

4uxvA

0.10

0.08

0.77

1.34

MUSTER

-------------------------------------------------KIYAEIDRLESWK----------------IEILNRSIVEEMSKIKH------------------LKMTGQTEEFFEKWREEWDEIVTA---HMPKVEELLYDAEENADKYR-----FKKANQVLVHIDDLLTAAESSIEKILREISDLVTSEEKSREEIEQVRYSKSRKNLLAYSHLYGELYDSLEKDLDEIWYITARKVLLEQDRNLERLQSYIDDVPKLLADCKQTVPGQIAKLKDGYGEMKEKGYKLEKELENLSNQLKRAEHVLMT-ELDIDEASAILQLIDENIQSVYQQLEGEVEAGQSVLMPELIIAYDKLKEEKEHTKAETELESYRLTAGELGKQQAFEKRLDEIGKLLSSVKDKLDAEHVAYSLLVEEVASIEKQIEEVKKEHAEYRENLQALRKEELQARETLSNLKKTISETARLLKTSNIP-GIPSHIQEMLENAHHHIQETVNQLNELPLNMEEAGAHLKQAEDIVNRASRESEELVEQVI-LIEKIIQFGNRFRSQNHILSEQLKEAERRDYDDSYEIAAAAVE--KAAPGAVEKIKAD---------------------------------------------------------

5ic0A

0.09

0.06

0.70

1.10

dPPAS

----------------------------------------------------------------------------------------------------------------------------------------HMAPGQKECDNALRQLETVRELLENPVQPINDMSYFGCLDSVMENSKVLGEAMTGISQNAKNGNLPEFGDAIATA-SKALCGFTEAAAQAAYLVGVSDPNSQAGQQGLVEPTQFARANQAIQMACQSLGEPGCTQAQVLSAATI-VAKHTSALCNSCRLASARTANPTAKRQFVQSAKEVANSTANLVKTIKALDGDFTEENRAQCRAATAPLLEAVDNLSAFASNPEFSSVPAQISPEGRAAMEPIVISAKTMLESAGGLIQTARALAVNPRDPPRWSVLAGHSRTVSDSIKKLITSMRDKAPGQLECETAIAALNSCLRDLDQASLAAVSQQLAPREGISQEALHTQMLTAVQEISHLIEPLASAARAEASQLGHKVSQMAQYFEPLTLAAVGAASKTHPQQMALLDQTKTLAESALQLLYTAKEAGGKQAAHTQEALEEAVQMMTEAVEDLTTTLNEAAS-------------------------------------------------------------

(a)	Iden1 is the number of template residues identical to query divided by number of aligned residues.
(b)	Iden2 is the number of template residues identical to query divided by query sequence length.
(c)	Cov is equal the number of aligned template residues divided by query sequence length.
(d)	Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment.
(e)	Download Align. list the threading program used to identify the template provide the 3D structure of aligned regions of threading templates.

Top 5 final models predicted by I-TASSER

(For each target, I-TASSER simulations generate a large ensemble of structural conformations, called decoys. To select the final models, I-TASSER uses the SPICKER program to cluster all the decoys based on the pair-wise structure similarity, and reports up to five models which corresponds to the five largest structure clusters. The confidence of each model is quantitatively measured by C-score that is calculated based on the significance of threading template alignments and the convergence parameters of the structure assembly simulations. C-score is typically in the range of [-5, 2], where a C-score of higher value signifies a model with a high confidence and vice-versa. TM-score and RMSD are estimated based on C-score and protein length following the correlation observed between these qualities. Since the top 5 models are ranked by the cluster size, it is possible that the lower-rank models have a higher C-score in rare cases. Although the first model has a better quality in most cases, it is also possible that the lower-rank models have a better quality than the higher-rank models as seen in our benchmark tests. If the I-TASSER simulations converge, it is possible to have less than 5 clusters generated. This is usually an indication that the models have a good quality because of the converged simulations.)

More about C-score

Local structure accuracy of first model

Download Model 1

C-score=-2.56

Estimated TM-score = 0.42±0.14

Estimated RMSD = 14.3±3.8Å

Download Model 2

C-score=-3.15

Download Model 3

C-score=-2.37

Download Model 4

C-score=-2.50

Download Model 5

C-score=-3.60

Proteins structureally close to the target in PDB (as identified by TM-align

(After the structure assembly simulation, I-TASSER uses the TM-align structural alignment program to match the first I-TASSER model to all structures in the PDB library. This section reports the top 10 proteins from the PDB that have the closest structural similarity, i.e. the highest TM-score, to the predicted I-TASSER model. Due to the structural similarity, these proteins often have similar function to the target. However, users are encouraged to use the data in the next section 'Predicted function using COACH' to infer the function of the target protein, since COACH has been extensively trained to derive biological functions from multi-source of sequence and structure features which has on average a higher accuracy than the function annotations derived only from the global structure comparison.)

Top 10 Identified stuctural analogs in PDB

Rank	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov
1	4ui9O	0.882	1.89	0.079	0.914
2	5c6gA	0.539	5.27	0.058	0.682
3	4xdnA	0.537	5.56	0.043	0.699
4	4uzyA	0.514	5.30	0.071	0.658
5	2xpiA	0.494	5.33	0.059	0.635
6	4ui9C	0.489	5.20	0.076	0.612
7	4n5cA	0.488	7.05	0.055	0.724
8	4ui9J	0.488	5.01	0.057	0.606
9	4ui9X	0.482	5.08	0.094	0.606
10	5dseA	0.450	5.05	0.074	0.571

(a)	Query structure is shown in cartoon, while the structural analog is displayed using backbone trace.
(b)	Ranking of proteins is based on TM-score of the structural alignment between the query structure and known structures in the PDB library.
(c)	RMSD^a is the RMSD between residues that are structurally aligned by TM-align.
(d)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(e)	Cov represents the coverage of the alignment by TM-align and is equal to the number of structurally aligned residues divided by length of the query protein.

Predicted function using COACH

(This section reports biological annotations of the target protein by COACH based on the I-TASSER structure prediction. COACH is a meta-server approach that combines multiple function annotation results from the COFACTOR, TM-SITE and S-SITE programs.)

Ligand binding sites

Rank	C-score	Cluster size	PDB Hit	Lig Name	Download Complex	Ligand Binding Site Residues
1	0.06	2	3cmvB	ANP	Rep, Mult	283,285,286,287,288,325
2	0.06	2	3j001	PEV	Rep, Mult	298,308,311,312
3	0.06	2	4ecgA	CA	Rep, Mult	138,140
4	0.03	1	1g3uA	MG	Rep, Mult	38,237
5	0.03	1	2np5A	NDS	Rep, Mult	373,376
6	0.03	1	3v2d2	MG	Rep, Mult	407,411
7	0.03	1	1vdfB	CL	Rep, Mult	303,306
8	0.03	1	5lcwO	III	Rep, Mult	105,109,129,132,133,151,157,172,176,183,212,216,219,247,250,251,254,258,284,288,292,295,326,330,333,334,368,445
9	0.03	1	3cmvG	ANP	Rep, Mult	249,250,251,252,253,254,255
10	0.03	1	3cmvH	ANP	Rep, Mult	261,262,266,267,268
11	0.03	1	3cmvE	ANP	Rep, Mult	246,248,249,250,290
12	0.03	1	1hz40	III	Rep, Mult	275,277,278,309,312,317
13	0.03	1	3qfyB	BGC	Rep, Mult	234,238,243,244
14	0.03	1	1qghA	FE	Rep, Mult	276,280
15	0.03	1	3pyoY	MG	Rep, Mult	396,440

	Download the all possible binding ligands and detailed prediction summary.
	Download the templates clustering results.
(a)	C-score is the confidence score of the prediction. C-score ranges [0-1], where a higher score indicates a more reliable prediction.
(b)	Cluster size is the total number of templates in a cluster.
(c)	Lig Name is name of possible binding ligand. Click the name to view its information in the BioLiP database.
(d)	Rep is a single complex structure with the most representative ligand in the cluster, i.e., the one listed in the Lig Name column. Mult is the complex structures with all potential binding ligands in the cluster.

Enzyme Commission (EC) numbers and active sites

Rank	Cscore^EC	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov	EC Number	Active Site Residues
1	0.060	1ug9A	0.327	7.54	0.054	0.511	3.2.1.70	NA
2	0.060	1hn0A	0.310	7.87	0.051	0.495	4.2.2.20	298
3	0.060	2qf7A	0.332	8.19	0.043	0.548	6.4.1.1	NA
4	0.060	2pziA	0.311	7.86	0.042	0.498	2.7.11.1	325
5	0.060	3gtgB	0.324	8.26	0.049	0.535	2.7.7.6	NA
6	0.060	3iydC	0.334	8.13	0.034	0.545	2.7.7.6	NA
7	0.060	1kktA	0.311	5.55	0.057	0.408	3.2.1.113	NA
8	0.060	2vumB	0.296	8.34	0.034	0.491	2.7.7.6	NA
9	0.060	1kc7A	0.324	7.72	0.043	0.506	2.7.9.1	NA
10	0.060	2zxqA	0.310	7.95	0.035	0.497	3.2.1.97	260
11	0.060	3btaA	0.345	8.35	0.046	0.583	3.4.24.69	NA
12	0.060	2ipyA	0.281	8.37	0.028	0.471	4.2.1.3	NA
13	0.060	1kblA	0.320	7.62	0.039	0.497	2.7.9.1	NA
14	0.060	2uv8G	0.322	8.41	0.056	0.542	2.3.1.86	NA
15	0.060	1h54B	0.321	7.05	0.077	0.473	2.4.1.8	NA
16	0.060	1w3bB	0.360	4.50	0.079	0.439	2.4.1.-	282,316
17	0.060	3ebgA	0.315	6.97	0.025	0.456	3.4.11.-	NA
18	0.060	2wyhA	0.308	7.79	0.032	0.485	3.2.1.24	228,233
19	0.060	1vbgA	0.308	8.10	0.047	0.501	2.7.9.1	NA

(a)	Cscore^EC is the confidence score for the EC number prediction. Cscore^EC values range in between [0-1]; where a higher score indicates a more reliable EC number prediction.
(b)	TM-score is a measure of global structural similarity between query and template protein.
(c)	RMSD^a is the RMSD between residues that are structurally aligned by TM-align.
(d)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(e)	Cov represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein.

Gene Ontology (GO) terms

Rank	Cscore^GO	TM-score	RMSD^a	IDEN^a	Cov	PDB Hit	Associated GO Terms
Homologous GO templates in PDB
0	0.28	0.852	2.95	0.07	0.92	5g05O	GO:0005634 GO:0005654 GO:0005680 GO:0005829 GO:0007049 GO:0007067 GO:0016567 GO:0019903 GO:0031145 GO:0042787 GO:0043161 GO:0051301 GO:0051436 GO:0051437 GO:0051439 GO:0070979
1	0.11	0.514	5.30	0.07	0.66	4uzyA	GO:0005929 GO:0030992 GO:0031514 GO:0042073 GO:0042384
2	0.07	0.539	5.27	0.06	0.68	5c6gA	GO:0000790 GO:0006302 GO:0007064 GO:0007076 GO:0032116 GO:0070550 GO:0071169
3	0.07	0.537	5.56	0.04	0.70	4xdnA	GO:0000790 GO:0005634 GO:0006302 GO:0007049 GO:0007059 GO:0007064 GO:0007067 GO:0007076 GO:0032116 GO:0051301 GO:0070550 GO:0071169
4	0.06	0.427	6.28	0.04	0.58	4bujB	GO:0005634 GO:0005737 GO:0034427 GO:0051607 GO:0055087 GO:0070478 GO:0070481
5	0.06	0.336	6.91	0.05	0.48	4kvmB	GO:0004596 GO:0005737 GO:0010698 GO:0016740 GO:0017196 GO:0031415 GO:0031416 GO:0043085 GO:1902391
6	0.06	0.234	7.78	0.02	0.37	5a9yA	GO:0000166 GO:0003924 GO:0005525 GO:0005829 GO:0009408 GO:0009409
7	0.06	0.254	3.04	0.11	0.28	2pl2A
8	0.06	0.228	4.50	0.07	0.27	4houA	GO:0002376 GO:0003723 GO:0005737 GO:0005829 GO:0009615 GO:0016032 GO:0019060 GO:0032091 GO:0043657 GO:0045070 GO:0045071 GO:0045087 GO:0050688 GO:0050689 GO:0051097 GO:0051607 GO:0060337 GO:0071357 GO:0071360
9	0.06	0.176	7.91	0.03	0.28	1xl7B	GO:0005102 GO:0005739 GO:0005777 GO:0006091 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0008458 GO:0009437 GO:0010243 GO:0015908 GO:0015936 GO:0016740 GO:0016746 GO:0042493 GO:0043231 GO:0051791
10	0.06	0.174	6.78	0.06	0.25	5iz3A	GO:0005975 GO:0016311 GO:0016787 GO:0042132 GO:0042578
11	0.06	0.175	7.03	0.02	0.26	3j6b1	GO:0003735 GO:0005739 GO:0005762 GO:0005840 GO:0030529 GO:0032543
12	0.06	0.188	2.91	0.07	0.21	2fo7A
13	0.06	0.183	6.43	0.06	0.26	3vylA	GO:0046872
14	0.06	0.170	2.54	0.09	0.18	2xevB	GO:0046872 GO:0070206
15	0.06	0.177	5.75	0.05	0.23	4k92A	GO:0000086 GO:0000226 GO:0000775 GO:0000776 GO:0000777 GO:0001578 GO:0002162 GO:0005694 GO:0005737 GO:0005794 GO:0005813 GO:0005815 GO:0005819 GO:0005828 GO:0005829 GO:0005856 GO:0005874 GO:0005876 GO:0005881 GO:0005925 GO:0005938 GO:0006903 GO:0007020 GO:0007026 GO:0007030 GO:0007049 GO:0007052 GO:0007062 GO:0007067 GO:0007163 GO:0008017 GO:0010458 GO:0010470 GO:0010634 GO:0010717 GO:0016020 GO:0030953 GO:0030981 GO:0031023 GO:0031111 GO:0031116 GO:0031592 GO:0034453 GO:0035371 GO:0040001 GO:0043515 GO:0045180 GO:0045921 GO:0051010 GO:0051294 GO:0051301 GO:0051497 GO:0051893 GO:0070062 GO:0070507 GO:0090091 GO:0090162 GO:0090307 GO:1903690 GO:1904261
16	0.06	0.198	6.95	0.04	0.29	3qluB	GO:0004872 GO:0004970 GO:0005216 GO:0005234 GO:0005783 GO:0005886 GO:0006621 GO:0006810 GO:0006811 GO:0007268 GO:0008066 GO:0008328 GO:0014069 GO:0015277 GO:0016020 GO:0016021 GO:0017124 GO:0030054 GO:0030165 GO:0030424 GO:0030425 GO:0031630 GO:0032983 GO:0034220 GO:0035235 GO:0035249 GO:0042391 GO:0042734 GO:0042802 GO:0043005 GO:0043025 GO:0043113 GO:0043195 GO:0043204 GO:0043525 GO:0045202 GO:0045211 GO:0051649 GO:0060079 GO:0071333
17	0.06	0.191	5.74	0.07	0.25	3qxlA	GO:0005085 GO:0005737 GO:0005886 GO:0007264 GO:0008321 GO:0016020 GO:0032485 GO:0035556 GO:0043547
18	0.06	0.181	6.22	0.07	0.25	2jc4A	GO:0003677 GO:0004518 GO:0004519 GO:0005622 GO:0006281 GO:0008853 GO:0016787 GO:0090305

Consensus prediction of GO terms

Molecular Function	GO:0019902
GO-Score	0.56
Biological Processes	GO:1901990	GO:1904668	GO:0000209	GO:0010498	GO:2000060	GO:0051439	GO:1904667	GO:0051301	GO:0007067
GO-Score	0.56	0.56	0.56	0.56	0.56	0.56	0.56	0.33	0.33
Cellular Component	GO:0031981	GO:0000152	GO:0031461	GO:0044444
GO-Score	0.56	0.56	0.56	0.56

(a)	Cscore^GO is a combined measure for evaluating global and local similarity between query and template protein. It's range is [0-1] and higher values indicate more confident predictions.
(b)	TM-score is a measure of global structural similarity between query and template protein.
(c)	RMSD^a is the RMSD between residues that are structurally aligned by TM-align.
(d)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(e)	Cov represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein.
(f)	The second table shows a consensus GO terms amongst the top scoring templates. The GO-Score associated with each prediction is defined as the average weight of the GO term, where the weights are assigned based on Cscore^GO of the template.

[Click on result.tar.bz2 to download the tarball file including all modelling results listed on this page]

Please cite the following articles when you use the I-TASSER server:
1.	J Yang, R Yan, A Roy, D Xu, J Poisson, Y Zhang. The I-TASSER Suite: Protein structure and function prediction. Nature Methods, 12: 7-8, 2015.
2.	J Yang, Y Zhang. I-TASSER server: new development for protein structure and function predictions, Nucleic Acids Research, 43: W174-W181, 2015.
3.	A Roy, A Kucukural, Y Zhang. I-TASSER: a unified platform for automated protein structure and function prediction. Nature Protocols, 5: 725-738, 2010.
4.	Y Zhang. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics, 9: 40, 2008.