Threading Zmax Znorm MUSTER 5.38 0.93 dPPAS 10.21 1.10 wdPPAS 16.99 1.83 wMUSTER 7.24 1.25 wPPAS 15.06 2.15 dPPAS2 27.15 2.59 PPAS 10.16 1.45 Env-PPAS 21.08 2.63 ================================================================== | Estimated accuracy of your models | ================================================================== Estimated Clusters (N=9279) --------------------- ------------------ Model# C-score TM-score RMSD (A) #decoys density ------ ------- ---------- -------- ------- ------- model1 -2.58 0.42+-0.14 12.6+-4.3 2005 0.044 model2 -3.93 537 0.011 model3 -3.73 492 0.014 model4 -3.71 228 0.014 model5 -4.93 207 0.004 C-score is a confidence score of the I-TASSER predictions which is typically in [-5,2]. TM-score and RMSD measure how close the model is to the native structure and both are estimated based on the C-score. TM-score is in [0,1] with a value >0.5 implying the model of correct topology. The TM-score and RMSD estimations are made only for the first model because absolute values of TM-score and RMSD for the lower-rank models do not strongly correlate with the C-score. The models are ranked based on the structure density of I-TASSER simulations. Please cite following articles when you use the I-TASSER Suite: 1. Y Zhang. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics, 9: 40 (2008). 2. A Roy, A Kucukural, Y Zhang. I-TASSER: a unified platform for automated protein structure and function prediction. Nature Protocols, 5: 725-738 (2010). 3. J Yang, A Roy, Y Zhang. Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment. Bioinformatics, 29:2588-2595 (2013).