Threading Zmax Znorm MUSTER 8.88 1.53 dPPAS 15.91 1.71 wdPPAS 19.32 2.08 wMUSTER 10.64 1.84 wPPAS 18.28 2.61 dPPAS2 35.30 3.36 PPAS 15.79 2.26 Env-PPAS 22.67 2.83 ================================================================== | Estimated accuracy of your models | ================================================================== Estimated Clusters (N=3012) --------------------- ------------------ Model# C-score TM-score RMSD (A) #decoys density ------ ------- ---------- -------- ------- ------- model1 -0.82 0.61+-0.14 8.7+-4.6 2062 0.193 model2 -0.96 1430 0.168 model3 -0.65 1451 0.229 C-score is a confidence score of the I-TASSER predictions which is typically in [-5,2]. TM-score and RMSD measure how close the model is to the native structure and both are estimated based on the C-score. TM-score is in [0,1] with a value >0.5 implying the model of correct topology. The TM-score and RMSD estimations are made only for the first model because absolute values of TM-score and RMSD for the lower-rank models do not strongly correlate with the C-score. The models are ranked based on the structure density of I-TASSER simulations. Please cite following articles when you use the I-TASSER Suite: 1. Y Zhang. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics, 9: 40 (2008). 2. A Roy, A Kucukural, Y Zhang. I-TASSER: a unified platform for automated protein structure and function prediction. Nature Protocols, 5: 725-738 (2010). 3. J Yang, A Roy, Y Zhang. Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment. Bioinformatics, 29:2588-2595 (2013).