Threading Zmax Znorm MUSTER 22.21 3.83 dPPAS 40.86 4.39 wdPPAS 64.62 6.95 wMUSTER 27.98 4.82 wPPAS 56.14 8.02 dPPAS2 81.58 7.77 PPAS 50.52 7.22 Env-PPAS 9.67 1.21 ================================================================== | Estimated accuracy of your models | ================================================================== Estimated Clusters (N=2259) --------------------- ------------------ Model# C-score TM-score RMSD (A) #decoys density ------ ------- ---------- -------- ------- ------- model1 0.28 0.75+-0.10 7.2+-4.2 1506 0.240 model2 -0.63 744 0.096 model3 -2.86 69 0.010 C-score is a confidence score of the I-TASSER predictions which is typically in [-5,2]. TM-score and RMSD measure how close the model is to the native structure and both are estimated based on the C-score. TM-score is in [0,1] with a value >0.5 implying the model of correct topology. The TM-score and RMSD estimations are made only for the first model because absolute values of TM-score and RMSD for the lower-rank models do not strongly correlate with the C-score. The models are ranked based on the structure density of I-TASSER simulations. Please cite following articles when you use the I-TASSER Suite: 1. Y Zhang. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics, 9: 40 (2008). 2. A Roy, A Kucukural, Y Zhang. I-TASSER: a unified platform for automated protein structure and function prediction. Nature Protocols, 5: 725-738 (2010). 3. J Yang, A Roy, Y Zhang. Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment. Bioinformatics, 29:2588-2595 (2013).