Threading Zmax Znorm MUSTER 5.39 0.93 dPPAS 6.95 0.75 wdPPAS 5.29 0.57 wMUSTER 5.12 0.88 wPPAS 4.99 0.71 dPPAS2 12.27 1.17 PPAS 6.38 0.91 Env-PPAS 5.39 0.67 ================================================================== | Estimated accuracy of your models | ================================================================== Estimated Clusters (N=11034) --------------------- ------------------ Model# C-score TM-score RMSD (A) #decoys density ------ ------- ---------- -------- ------- ------- model1 -3.03 0.37+-0.13 12.9+-4.2 3058 0.058 model2 -3.19 2355 0.050 model3 -3.03 2292 0.059 model4 -3.81 759 0.027 model5 -2.88 2285 0.068 C-score is a confidence score of the I-TASSER predictions which is typically in [-5,2]. TM-score and RMSD measure how close the model is to the native structure and both are estimated based on the C-score. TM-score is in [0,1] with a value >0.5 implying the model of correct topology. The TM-score and RMSD estimations are made only for the first model because absolute values of TM-score and RMSD for the lower-rank models do not strongly correlate with the C-score. The models are ranked based on the structure density of I-TASSER simulations. Please cite following articles when you use the I-TASSER Suite: 1. Y Zhang. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics, 9: 40 (2008). 2. A Roy, A Kucukural, Y Zhang. I-TASSER: a unified platform for automated protein structure and function prediction. Nature Protocols, 5: 725-738 (2010). 3. J Yang, A Roy, Y Zhang. Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment. Bioinformatics, 29:2588-2595 (2013).