Threading Zmax Znorm MUSTER 4.08 0.70 dPPAS 6.07 0.65 wdPPAS 7.20 0.77 wMUSTER 3.99 0.69 wPPAS 6.14 0.88 dPPAS2 12.12 1.15 PPAS 5.35 0.76 Env-PPAS 5.38 0.67 ================================================================== | Estimated accuracy of your models | ================================================================== Estimated Clusters (N=20200) --------------------- ------------------ Model# C-score TM-score RMSD (A) #decoys density ------ ------- ---------- -------- ------- ------- model1 -3.87 0.30+-0.10 13.9+-3.9 3206 0.027 model2 -3.96 2705 0.024 model3 -3.96 3114 0.024 model4 -4.95 960 0.009 model5 -4.49 1589 0.014 C-score is a confidence score of the I-TASSER predictions which is typically in [-5,2]. TM-score and RMSD measure how close the model is to the native structure and both are estimated based on the C-score. TM-score is in [0,1] with a value >0.5 implying the model of correct topology. The TM-score and RMSD estimations are made only for the first model because absolute values of TM-score and RMSD for the lower-rank models do not strongly correlate with the C-score. The models are ranked based on the structure density of I-TASSER simulations. Please cite following articles when you use the I-TASSER Suite: 1. Y Zhang. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics, 9: 40 (2008). 2. A Roy, A Kucukural, Y Zhang. I-TASSER: a unified platform for automated protein structure and function prediction. Nature Protocols, 5: 725-738 (2010). 3. J Yang, A Roy, Y Zhang. Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment. Bioinformatics, 29:2588-2595 (2013).