Threading Zmax Znorm MUSTER 4.82 0.83 dPPAS 7.29 0.78 wdPPAS 7.24 0.78 wMUSTER 5.33 0.92 wPPAS 6.33 0.91 dPPAS2 13.27 1.26 PPAS 6.28 0.90 Env-PPAS 6.10 0.76 ================================================================== | Estimated accuracy of your models | ================================================================== Estimated Clusters (N=16044) --------------------- ------------------ Model# C-score TM-score RMSD (A) #decoys density ------ ------- ---------- -------- ------- ------- model1 -1.75 0.50+-0.15 8.1+-4.4 11183 0.194 model2 -2.46 5182 0.096 model3 -4.22 797 0.016 model4 -4.60 612 0.011 model5 -4.46 404 0.013 C-score is a confidence score of the I-TASSER predictions which is typically in [-5,2]. TM-score and RMSD measure how close the model is to the native structure and both are estimated based on the C-score. TM-score is in [0,1] with a value >0.5 implying the model of correct topology. The TM-score and RMSD estimations are made only for the first model because absolute values of TM-score and RMSD for the lower-rank models do not strongly correlate with the C-score. The models are ranked based on the structure density of I-TASSER simulations. Please cite following articles when you use the I-TASSER Suite: 1. Y Zhang. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics, 9: 40 (2008). 2. A Roy, A Kucukural, Y Zhang. I-TASSER: a unified platform for automated protein structure and function prediction. Nature Protocols, 5: 725-738 (2010). 3. J Yang, A Roy, Y Zhang. Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment. Bioinformatics, 29:2588-2595 (2013).