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I-TASSER results for job id Rv0979c

[Click on result.tar.bz2 to download the tarball file including all modelling results listed on this page]

 Input Sequence in FASTA format
 Predicted Secondary Structure
 Predicted Solvent Accessibility
 Predicted Normalized B-facotr
 Top 10 threading templates used by I-TASSER
 Top 5 final models predicted by I-TASSER

(For each target, I-TASSER simulations generate a large ensemble of structural conformations, called decoys. To select the final models, I-TASSER uses the SPICKER program to cluster all the decoys based on the pair-wise structure similarity, and reports up to five models which corresponds to the five largest structure clusters. The confidence of each model is quantitatively measured by C-score that is calculated based on the significance of threading template alignments and the convergence parameters of the structure assembly simulations. C-score is typically in the range of [-5, 2], where a C-score of higher value signifies a model with a high confidence and vice-versa. TM-score and RMSD are estimated based on C-score and protein length following the correlation observed between these qualities. Since the top 5 models are ranked by the cluster size, it is possible that the lower-rank models have a higher C-score in rare cases. Although the first model has a better quality in most cases, it is also possible that the lower-rank models have a better quality than the higher-rank models as seen in our benchmark tests. If the I-TASSER simulations converge, it is possible to have less than 5 clusters generated. This is usually an indication that the models have a good quality because of the converged simulations.)
 Proteins structureally close to the target in PDB (as identified by TM-align

(After the structure assembly simulation, I-TASSER uses the TM-align structural alignment program to match the first I-TASSER model to all structures in the PDB library. This section reports the top 10 proteins from the PDB that have the closest structural similarity, i.e. the highest TM-score, to the predicted I-TASSER model. Due to the structural similarity, these proteins often have similar function to the target. However, users are encouraged to use the data in the next section 'Predicted function using COACH' to infer the function of the target protein, since COACH has been extensively trained to derive biological functions from multi-source of sequence and structure features which has on average a higher accuracy than the function annotations derived only from the global structure comparison.)
 Predicted function using COACH

(This section reports biological annotations of the target protein by COACH based on the I-TASSER structure prediction. COACH is a meta-server approach that combines multiple function annotation results from the COFACTOR, TM-SITE and S-SITE programs.)
  Ligand binding sites

Rank C-score Cluster
size		 PDB
Hit		 Lig
Name		 Download
Complex		 Ligand Binding Site Residues
10.13 5 4kigB CA Rep, Mult 56,57
20.11 4 1ko7A PO4 Rep, Mult 15,35,36,40
30.08 3 5e98B GNS Rep, Mult 53,55
40.05 2 3o5bA BGC Rep, Mult 7,8,43,49,50,63
50.03 1 3cuzA MG Rep, Mult 23,53
60.03 1 4gqtA ZN Rep, Mult 57,61
70.03 1 2oi5B ACO Rep, Mult 8,9,25,26,34,35,49,54
80.03 1 4n99A CA Rep, Mult 44,45
90.03 1 3rbhC CA Rep, Mult 6,8,10,41

Download the all possible binding ligands and detailed prediction summary.
Download the templates clustering results.
(a)C-score is the confidence score of the prediction. C-score ranges [0-1], where a higher score indicates a more reliable prediction.
(b)Cluster size is the total number of templates in a cluster.
(c)Lig Name is name of possible binding ligand. Click the name to view its information in the BioLiP database.
(d)Rep is a single complex structure with the most representative ligand in the cluster, i.e., the one listed in the Lig Name column.
Mult is the complex structures with all potential binding ligands in the cluster.

  Enzyme Commission (EC) numbers and active sites

RankCscoreECPDB
Hit		TM-scoreRMSDaIDENaCovEC NumberActive Site Residues
10.0602af4C0.4173.090.0410.7662.3.1.8NA
20.0602pmgB0.3844.090.1000.8595.4.2.234
30.0601iruE0.4073.440.0870.7033.4.25.1NA
40.0608tlnE0.4033.370.1060.7193.4.24.2738
50.0601bdgA0.4073.840.0790.8592.7.1.137,53
60.0601y1nA0.3004.910.0330.8593.4.11.18NA
70.0601hzoA0.3953.840.0190.7973.5.2.6NA
80.0601jnwA0.4093.230.1020.7031.4.3.5NA
90.0601wv4A0.3453.900.0520.6561.4.3.5NA
100.0602gqdA0.4004.050.0520.8442.3.1.179NA
110.0601bsgA0.4014.150.0180.8283.5.2.6NA
120.0603e47T0.3953.240.1280.6883.4.25.17,32
130.0601ig8A0.3934.130.0630.8912.7.1.1NA
140.0601yljA0.3923.810.0730.8123.5.2.6NA
150.0603lrfA0.4013.820.0510.8442.3.1.4111
160.0601espA0.4043.670.0400.7663.4.24.28NA
170.0601hskA0.4023.370.0430.7341.1.1.158NA
180.0603d1rA0.4033.680.0400.7663.1.3.118
190.0601qwoA0.3984.090.0160.8593.1.3.8NA

(a)CscoreEC is the confidence score for the EC number prediction. CscoreEC values range in between [0-1];
where a higher score indicates a more reliable EC number prediction.
(b)TM-score is a measure of global structural similarity between query and template protein.
(c)RMSDa is the RMSD between residues that are structurally aligned by TM-align.
(d)IDENa is the percentage sequence identity in the structurally aligned region.
(e)Cov represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided
by length of the query protein.

  Gene Ontology (GO) terms

Homologous GO templates in PDB 
RankCscoreGOTM-scoreRMSDaIDENaCovPDB HitAssociated GO Terms
00.070.3954.170.080.884qs7A GO:0000166 GO:0001678 GO:0004340 GO:0004396 GO:0005524 GO:0005536 GO:0005634 GO:0005739 GO:0005741 GO:0005773 GO:0005774 GO:0005829 GO:0005975 GO:0006096 GO:0008270 GO:0008865 GO:0009536 GO:0009750 GO:0010148 GO:0010182 GO:0010255 GO:0012501 GO:0016020 GO:0016021 GO:0016301 GO:0016310 GO:0016740 GO:0016773 GO:0019158 GO:0019320 GO:0046835 GO:0051156 GO:0090332
10.060.3934.130.060.891ig8A GO:0000166 GO:0001302 GO:0001678 GO:0003824 GO:0004340 GO:0004396 GO:0005524 GO:0005536 GO:0005634 GO:0005739 GO:0005829 GO:0005975 GO:0006000 GO:0006006 GO:0006013 GO:0006096 GO:0008152 GO:0008865 GO:0016301 GO:0016310 GO:0016740 GO:0016773 GO:0019158 GO:0019318 GO:0032445 GO:0046015 GO:0046323 GO:0046835 GO:0051156
20.060.3944.510.080.925hfuB GO:0000166 GO:0001678 GO:0002931 GO:0003824 GO:0004340 GO:0004396 GO:0005524 GO:0005536 GO:0005739 GO:0005741 GO:0005829 GO:0005975 GO:0006006 GO:0006096 GO:0007595 GO:0008152 GO:0008637 GO:0008865 GO:0015758 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016773 GO:0019158 GO:0019318 GO:0035795 GO:0046324 GO:0046835 GO:0051156 GO:0061621 GO:0072655 GO:0072656 GO:0098779 GO:2000378
30.060.4044.210.080.861qhaA GO:0000166 GO:0001678 GO:0003824 GO:0004340 GO:0004396 GO:0005524 GO:0005536 GO:0005739 GO:0005741 GO:0005829 GO:0005929 GO:0005975 GO:0006096 GO:0008152 GO:0008865 GO:0015758 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016773 GO:0019158 GO:0019318 GO:0045121 GO:0046835 GO:0051156 GO:0061621 GO:0072655 GO:0072656 GO:0097228
40.060.3184.460.030.752nztB GO:0000166 GO:0001678 GO:0002931 GO:0003824 GO:0004340 GO:0004396 GO:0005524 GO:0005536 GO:0005739 GO:0005741 GO:0005829 GO:0005975 GO:0006006 GO:0006096 GO:0007595 GO:0008152 GO:0008637 GO:0008865 GO:0015758 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016773 GO:0019158 GO:0019318 GO:0035795 GO:0046324 GO:0046835 GO:0051156 GO:0061621 GO:0072655 GO:0072656 GO:0098779 GO:2000378
50.060.4084.280.030.863b8aX GO:0000166 GO:0001678 GO:0003824 GO:0004340 GO:0004396 GO:0005524 GO:0005536 GO:0005737 GO:0005739 GO:0005975 GO:0006000 GO:0006006 GO:0006013 GO:0006096 GO:0008152 GO:0008865 GO:0016301 GO:0016310 GO:0016740 GO:0016773 GO:0019158 GO:0019318 GO:0032445 GO:0046323 GO:0046835 GO:0051156
60.060.3284.930.080.833zx3B GO:0000166 GO:0005524 GO:0005615 GO:0008021 GO:0009986 GO:0010238 GO:0010332 GO:0010996 GO:0014069 GO:0016020 GO:0016021 GO:0016323 GO:0016787 GO:0016887 GO:0031000 GO:0032496 GO:0033198 GO:0033602 GO:0035456 GO:0035457 GO:0042802 GO:0043005 GO:0043025 GO:0043262 GO:0043278 GO:0051260 GO:0071222 GO:0071275 GO:0071356 GO:0097060 GO:1903576 GO:2001170
70.060.3834.380.060.882yhxA GO:0000166 GO:0001302 GO:0001678 GO:0003824 GO:0004340 GO:0004396 GO:0005524 GO:0005536 GO:0005634 GO:0005739 GO:0005829 GO:0005975 GO:0006000 GO:0006006 GO:0006013 GO:0006096 GO:0008152 GO:0008865 GO:0016301 GO:0016310 GO:0016740 GO:0016773 GO:0019158 GO:0019318 GO:0032445 GO:0046015 GO:0046323 GO:0046835 GO:0051156
80.060.3094.280.020.703bu8B GO:0000723 GO:0000781 GO:0000783 GO:0000784 GO:0003677 GO:0003691 GO:0003720 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005794 GO:0007004 GO:0007049 GO:0008022 GO:0010628 GO:0010629 GO:0016233 GO:0030870 GO:0031627 GO:0031848 GO:0032204 GO:0032205 GO:0032206 GO:0032208 GO:0032210 GO:0032214 GO:0042162 GO:0042803 GO:0044877 GO:0051000 GO:0070187 GO:0070198 GO:0090398 GO:0098505 GO:1903770 GO:1903824 GO:1904354 GO:1904430 GO:2000773
90.060.3654.170.020.811nunA GO:0000132 GO:0000165 GO:0000187 GO:0001525 GO:0001656 GO:0001759 GO:0001823 GO:0001974 GO:0003338 GO:0004713 GO:0005088 GO:0005102 GO:0005104 GO:0005111 GO:0005576 GO:0005615 GO:0005634 GO:0005886 GO:0006935 GO:0007267 GO:0007368 GO:0007431 GO:0007435 GO:0008083 GO:0008201 GO:0008284 GO:0008285 GO:0008543 GO:0008544 GO:0008589 GO:0009880 GO:0009887 GO:0009986 GO:0010468 GO:0010631 GO:0010634 GO:0010838 GO:0014066 GO:0014070 GO:0016303 GO:0018108 GO:0021983 GO:0030154 GO:0030177 GO:0030324 GO:0030538 GO:0030855 GO:0030878 GO:0030916 GO:0030949 GO:0031012 GO:0031016 GO:0031069 GO:0031076 GO:0031532 GO:0031659 GO:0032355 GO:0032496 GO:0032781 GO:0032808 GO:0032925 GO:0034394 GO:0035019 GO:0035108 GO:0035265 GO:0036092 GO:0042056 GO:0042060 GO:0042246 GO:0042472 GO:0042475 GO:0042693 GO:0043410 GO:0043547 GO:0043616 GO:0045596 GO:0045739 GO:0045740 GO:0045747 GO:0045893 GO:0045931 GO:0045944 GO:0046579 GO:0046854 GO:0046877 GO:0046934 GO:0048015 GO:0048146 GO:0048286 GO:0048514 GO:0048536 GO:0048538 GO:0048557 GO:0048565 GO:0048566 GO:0048645 GO:0048730 GO:0048752 GO:0048754 GO:0048807 GO:0048808 GO:0050671 GO:0050673 GO:0050674 GO:0050677 GO:0050678 GO:0050679 GO:0050731 GO:0050872 GO:0050918 GO:0050930 GO:0051145 GO:0051549 GO:0060019 GO:0060054 GO:0060173 GO:0060174 GO:0060425 GO:0060428 GO:0060430 GO:0060436 GO:0060441 GO:0060445 GO:0060447 GO:0060449 GO:0060496 GO:0060510 GO:0060513 GO:0060541 GO:0060594 GO:0060595 GO:0060615 GO:0060661 GO:0060664 GO:0060665 GO:0060667 GO:0060879 GO:0060915 GO:0061033 GO:0061115 GO:0070075 GO:0070352 GO:0070371 GO:0070374 GO:0070384 GO:0071157 GO:0071338 GO:0090263 GO:2001240
100.060.3094.420.050.722q5wE GO:0006777 GO:0016740 GO:0030366
110.060.2914.160.030.663sfvA GO:0000045 GO:0000139 GO:0000166 GO:0003924 GO:0005525 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005789 GO:0005794 GO:0005829 GO:0005913 GO:0006810 GO:0006888 GO:0006890 GO:0006897 GO:0006914 GO:0007030 GO:0007264 GO:0015031 GO:0016020 GO:0016192 GO:0016477 GO:0019068 GO:0030252 GO:0032402 GO:0034446 GO:0042384 GO:0042470 GO:0042742 GO:0047496 GO:0048208 GO:0070062 GO:0072606 GO:0090110 GO:0090557 GO:0098609 GO:0098641 GO:1903020
120.060.3124.450.040.723vx4D GO:0000166 GO:0005524 GO:0006508 GO:0006810 GO:0008233 GO:0008234 GO:0016020 GO:0016021 GO:0016887 GO:0022885 GO:0042626 GO:0043213 GO:0055085
130.060.3154.310.050.723eo3A GO:0000166 GO:0003824 GO:0004553 GO:0005524 GO:0005737 GO:0005829 GO:0006045 GO:0006047 GO:0006054 GO:0007155 GO:0008152 GO:0008761 GO:0009384 GO:0016301 GO:0016310 GO:0016740 GO:0016787 GO:0046835 GO:0046872
140.060.3643.490.090.724madB GO:0004553 GO:0004565 GO:0005975
150.060.3453.670.020.693cpjB GO:0000139 GO:0000166 GO:0003924 GO:0005525 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006914 GO:0007264 GO:0015031 GO:0016020 GO:0016192 GO:0034498 GO:0055037
160.060.3374.170.070.732yhwA GO:0000166 GO:0003824 GO:0004553 GO:0005524 GO:0005737 GO:0005829 GO:0006045 GO:0006047 GO:0006054 GO:0007155 GO:0008152 GO:0008761 GO:0009384 GO:0016301 GO:0016310 GO:0016740 GO:0016787 GO:0046835 GO:0046872
170.060.3044.090.020.593w0lA GO:0000166 GO:0001678 GO:0004340 GO:0004396 GO:0005524 GO:0005536 GO:0005623 GO:0005975 GO:0006096 GO:0016301 GO:0016310 GO:0016740 GO:0016773 GO:0032024 GO:0042593 GO:0045721 GO:0045725 GO:0046835 GO:0051156 GO:0051594
180.060.3314.650.060.812lp4A GO:0000155 GO:0000160 GO:0000166 GO:0004673 GO:0004871 GO:0005524 GO:0005737 GO:0005829 GO:0005886 GO:0006935 GO:0007165 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018106 GO:0023014 GO:0031400 GO:0035307 GO:0046777 GO:0051649


Consensus prediction of GO terms		 
Molecular Function GO:0035639 GO:0032550 GO:0004396 GO:0048029 GO:0032559
GO-Score 0.57 0.57 0.57 0.57 0.57
Biological Processes GO:0044262 GO:0055082 GO:0042593 GO:0061718 GO:0051220 GO:0061620 GO:0072595 GO:0072594 GO:0070585 GO:0006735 GO:0008645
GO-Score 0.57 0.57 0.57 0.36 0.36 0.36 0.36 0.36 0.36 0.36 0.36
Cellular Component GO:0031966 GO:0031968
GO-Score 0.47 0.47

(a)CscoreGO is a combined measure for evaluating global and local similarity between query and template protein. It's range is [0-1] and higher values indicate more confident predictions.
(b)TM-score is a measure of global structural similarity between query and template protein.
(c)RMSDa is the RMSD between residues that are structurally aligned by TM-align.
(d)IDENa is the percentage sequence identity in the structurally aligned region.
(e)Cov represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein.
(f)The second table shows a consensus GO terms amongst the top scoring templates. The GO-Score associated with each prediction is defined as the average weight of the GO term, where the weights are assigned based on CscoreGO of the template.

[Click on result.tar.bz2 to download the tarball file including all modelling results listed on this page]


Please cite the following articles when you use the I-TASSER server:
1. J Yang, R Yan, A Roy, D Xu, J Poisson, Y Zhang. The I-TASSER Suite: Protein structure and function prediction. Nature Methods, 12: 7-8, 2015.
2. J Yang, Y Zhang. I-TASSER server: new development for protein structure and function predictions, Nucleic Acids Research, 43: W174-W181, 2015.
3.A Roy, A Kucukural, Y Zhang. I-TASSER: a unified platform for automated protein structure and function prediction. Nature Protocols, 5: 725-738, 2010.
4.Y Zhang. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics, 9: 40, 2008.