I-TASSER results

I-TASSER results for job id Rv0822c

[Click on result.tar.bz2 to download the tarball file including all modelling results listed on this page]

Input Sequence in FASTA format

>protein (684 residues)
MSDGESAAPWARLSESAFPDGVDRWITVPPATWVAAQGPRDTQNVGCHATGAVSVADLIA
RLGPAFPDLPTHRHVAPEPEPSGRGPKVHDDADDQQDTEAIAIPAHSLEFLSELPDLRAA
NYPRADHARREPELPGKQLTGSARVRPLRIRRTSPAPAKPAPNSGRRPMVLAARSLAALF
AALALALTGGAWQWSASKNSRLNMVSALDPHSGDIVNPSGQHGDENFLLVGMDSRAGANA
NIGAGDAEDAGGARSDTVMLVNIPASRERVVAVSFPRDLAITPIQCEAWNPETGKYGPIY
DEKTGTMGPRLVYTETKLNSAFSFGGPKCLVKVIQKLSGLSINRFIAIDFVGFARMVEAL
GGVEVCSTTPLRDYELGTVLEHAGRQVIDGPTALNYVRARQVTTESNGDYGRIKRQQLFL
SSLLRSMISTDTLFNLSRLNNVVNMFIGNSYVDNVKTKDLVELGRSLQHMAAGHVTFVTV
PTGITDQNGDEPPRTSDMKALFTAIIDDDPLPLENDHNAQRLGNTPSTPPTTTKKAPQAG
LTNEIQHQQVTTTSPKEVTVQVSNSTGQAGLATTATDQLKRNGFNVMAPDDYPSSLLATT
VFFSPGNEQAAATVAAVFGQSKIERVTGIGQLVQVVLGQDFSAVRAPLPSGSTVSVQISR
NSSSPPTKLPEDLTVTNAADTTCE

Predicted Secondary Structure

Sequence	20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 620 640 660 680 \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| MSDGESAAPWARLSESAFPDGVDRWITVPPATWVAAQGPRDTQNVGCHATGAVSVADLIARLGPAFPDLPTHRHVAPEPEPSGRGPKVHDDADDQQDTEAIAIPAHSLEFLSELPDLRAANYPRADHARREPELPGKQLTGSARVRPLRIRRTSPAPAKPAPNSGRRPMVLAARSLAALFAALALALTGGAWQWSASKNSRLNMVSALDPHSGDIVNPSGQHGDENFLLVGMDSRAGANANIGAGDAEDAGGARSDTVMLVNIPASRERVVAVSFPRDLAITPIQCEAWNPETGKYGPIYDEKTGTMGPRLVYTETKLNSAFSFGGPKCLVKVIQKLSGLSINRFIAIDFVGFARMVEALGGVEVCSTTPLRDYELGTVLEHAGRQVIDGPTALNYVRARQVTTESNGDYGRIKRQQLFLSSLLRSMISTDTLFNLSRLNNVVNMFIGNSYVDNVKTKDLVELGRSLQHMAAGHVTFVTVPTGITDQNGDEPPRTSDMKALFTAIIDDDPLPLENDHNAQRLGNTPSTPPTTTKKAPQAGLTNEIQHQQVTTTSPKEVTVQVSNSTGQAGLATTATDQLKRNGFNVMAPDDYPSSLLATTVFFSPGNEQAAATVAAVFGQSKIERVTGIGQLVQVVLGQDFSAVRAPLPSGSTVSVQISRNSSSPPTKLPEDLTVTNAADTTCE
Prediction	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEHCCCCCCCCCCCCCCCCCCCEEEEEEEHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHCCCCCEEEEEEHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCEEEHCHHHHHHHHHHHCCEEHCCCCCCCCCCCCCCCCCCCEEHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEHCCCCCCCCCCEHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHCCCCCCHHHHHHHHHHHHCCEEHCCCCCCCCCCCEEEEHCCCCHHHHHHHHHHHCCCCEEHCCCCCCEEEEEHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Conf.Score	998888888878888888888777777888888888888778888888888877766655568888888888888888888877888888887777778888887777877778877888888888778888888888888888888888888888888888888765578999999999999999999999999998666544445677777777876778886899999757999887767777788888776489999995999989999975888876788888888777777665554445566778765577888888689999999999989998758998579999999986878976898887788887668986677799999999998547899998679999999999999999986576789999999999999875335899999999999998799888699997686778898655677999999999998888888777777778888888888888888888888888888888898856999994999987899999999998995765688888876589998799899999999997997567668888769999968888888888888887777888888888889988766788888889
	H:Helix; S:Strand; C:Coil

Predicted Solvent Accessibility

Sequence	20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 620 640 660 680 \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| MSDGESAAPWARLSESAFPDGVDRWITVPPATWVAAQGPRDTQNVGCHATGAVSVADLIARLGPAFPDLPTHRHVAPEPEPSGRGPKVHDDADDQQDTEAIAIPAHSLEFLSELPDLRAANYPRADHARREPELPGKQLTGSARVRPLRIRRTSPAPAKPAPNSGRRPMVLAARSLAALFAALALALTGGAWQWSASKNSRLNMVSALDPHSGDIVNPSGQHGDENFLLVGMDSRAGANANIGAGDAEDAGGARSDTVMLVNIPASRERVVAVSFPRDLAITPIQCEAWNPETGKYGPIYDEKTGTMGPRLVYTETKLNSAFSFGGPKCLVKVIQKLSGLSINRFIAIDFVGFARMVEALGGVEVCSTTPLRDYELGTVLEHAGRQVIDGPTALNYVRARQVTTESNGDYGRIKRQQLFLSSLLRSMISTDTLFNLSRLNNVVNMFIGNSYVDNVKTKDLVELGRSLQHMAAGHVTFVTVPTGITDQNGDEPPRTSDMKALFTAIIDDDPLPLENDHNAQRLGNTPSTPPTTTKKAPQAGLTNEIQHQQVTTTSPKEVTVQVSNSTGQAGLATTATDQLKRNGFNVMAPDDYPSSLLATTVFFSPGNEQAAATVAAVFGQSKIERVTGIGQLVQVVLGQDFSAVRAPLPSGSTVSVQISRNSSSPPTKLPEDLTVTNAADTTCE
Prediction	444265234353444344466445444442445445443454554345453333234334544544454345344455353654434444445544545445434444544543354545544455554442643445444544454454455555455554444222010111000011012012211111000111344144244344665544536566310000000000042454444434466443100000000001176430100000330103004243344343423333333333334444433210000113000500140037017040100000004003300000020203053404134242121441303020520000001011263440001004001200320052025352023043014004411442131504151013003202714474020100103213221111122630430051036444143544454544554455444545444554445545455445354550101000024342004300520273404334143365433401020145346004301720622403547535120100002105434243444444444455445554452255144352664518
	Values range from 0 (buried residue) to 8 (highly exposed residue)

Predicted Normalized B-facotr

(B-factor is a value to indicate the extent of the inherent thermal mobility of residues/atoms in proteins. In I-TASSER, this value is deduced from threading template proteins from the PDB in combination with the sequence profiles derived from sequence databases. The reported B-factor profile in the figure below corresponds to the normalized B-factor of the target protein, defined by B=(B'-u)/s, where B' is the raw B-factor value, u and s are respectively the mean and standard deviation of the raw B-factors along the sequence. (Click here to read more about predicted normalized B-factor)

Top 10 threading templates used by I-TASSER

Rank

PDB
Hit

Iden1

Iden2

Cov

Norm.
Zscore

Download
Align.

                  20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280                 300                 320                 340                 360                 380                 400                 420                 440                 460                 480                 500                 520                 540                 560                 580                 600                 620                 640                 660                 680

                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |

Sec.Str
Seq

CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEHCCCCCCCCCCCCCCCCCCCEEEEEEEHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHCCCCCEEEEEEHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCEEEHCHHHHHHHHHHHCCEEHCCCCCCCCCCCCCCCCCCCEEHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEHCCCCCCCCCCEHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHCCCCCCHHHHHHHHHHHHCCEEHCCCCCCCCCCCEEEEHCCCCHHHHHHHHHHHCCCCEEHCCCCCCEEEEEHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
MSDGESAAPWARLSESAFPDGVDRWITVPPATWVAAQGPRDTQNVGCHATGAVSVADLIARLGPAFPDLPTHRHVAPEPEPSGRGPKVHDDADDQQDTEAIAIPAHSLEFLSELPDLRAANYPRADHARREPELPGKQLTGSARVRPLRIRRTSPAPAKPAPNSGRRPMVLAARSLAALFAALALALTGGAWQWSASKNSRLNMVSALDPHSGDIVNPSGQHGDENFLLVGMDSRAGANANIGAGDAEDAGGARSDTVMLVNIPASRERVVAVSFPRDLAITPIQCEAWNPETGKYGPIYDEKTGTMGPRLVYTETKLNSAFSFGGPKCLVKVIQKLSGLSINRFIAIDFVGFARMVEALGGVEVCSTTPLRDYELGTVLEHAGRQVIDGPTALNYVRARQVTTESNGDYGRIKRQQLFLSSLLRSMISTDTLFNLSRLNNVVNMFIGNSYVDNVKTKDLVELGRSLQHMAAGHVTFVTVPTGITDQNGDEPPRTSDMKALFTAIIDDDPLPLENDHNAQRLGNTPSTPPTTTKKAPQAGLTNEIQHQQVTTTSPKEVTVQVSNSTGQAGLATTATDQLKRNGFNVMAPDDYPSSLLATTVFFSPGNEQAAATVAAVFGQSKIERVTGIGQLVQVVLGQDFSAVRAPLPSGSTVSVQISRNSSSPPTKLPEDLTVTNAADTTCE

3telA

0.18

0.09

0.51

1.53

MUSTER

---------------------------------------------------------------------------------------------------------------SEYLADSEIENVTQLTSVTAPTGTDNENIQKLLADIKSSQNTDLTVNQSS------SYLAAYKSLIA-AIVLNSVFENIIELEYPDYASKIKKIYTKGFTKKVEAPKTSKNQSFNIYVSGIDTYGPIS-----------SVSRSDVNILMTVNRDTKKILLTTTPADAYVPIADG------------------------GNNQKDKLTHAGIYG-VDSSIHTLENLYGVDINYYVRLNFTSFLKMIDLLGGVDVHNDQEFSALHGK-FHFPVGNVHLDSEQALGFVRERY--SLADGDRDRGRNQQKVIVAILQKLTSTEALKNYSTIINSLQDSIQ----TNVPLETMINLVNAQLESGGNKVNSQDLKGTGRMDLPSMEIDDSSLAVVKAAIQDV--MEGR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------

3telA

0.17

0.09

0.52

2.09

dPPAS

------------------------------------------------------------------------------------------------------------------SEYSLSVAVLADSEIENVTQLTSVTAPTGTDNENIQKLLADIKSSQNTDLTVNQSSSYLAAYKSLIAVLNSVFENIIELEYPDYASKIKKIYTKGFTKKVEAPKTSKNQSFNIYVSGIDTYGPIS-----------SVSRSDVNILMTVNRDTKKILLTTTPADAYVPIADG------------------------GNNQKDKLTHAGIYG-VDSSIHTLENLYGVDINYYVRLNFTSFLKMIDLLGGVDVHNDQEFSALH-GKFHFPVGNVHLDSEQALGFVRERY--SLADGDRDRGRNQQKVIVAILQKLTSTEALKNYSTIINSLQDSIQ----TNVPLETMINLVNAQLEGGNYKVNSQDLKGTGRMDLPSMEIDDSSLAVVKAAIQDVMEGR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------

3telA

0.17

0.09

0.51

3.77

wdPPAS

----------------------------------------------------------------------------------------------------------------------SEADSEIENVTQLTSVTAPTGTDNENIQKLLADIKSSQNTDLTVNQSSSYLAAYKSLIAGETKAIVSVFENIIELEYPDYASKIKKIYTKGFTKKVEAPKTSKNQSFNIYVSGIDTYGPISS-----------VSRSDVNILMTVNRDTKKILLTTTPADAYVPIADG------------------------GNNQKDKLTHAGIYG-VDSSIHTLENLYGVDINYYVRLNFTSFLKMIDLLGGVDVHNDQEFSALHGK-FHFPVGNVHLDSEQALGFVRERY--SLADGDRDRGRNQQKVIVAILQKLTSTEALKNYSTIINSLQDS----IQTNVPLETMINLVNAQLEGGNYKVNSQDLKGTGRMDLPSMEIDDSSLAVVKAAIQDV--MEGR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------

3telA

0.17

0.09

0.50

1.98

wMUSTER

---------------------------------------------------------------------------------------------------------------------------LADSEIENVTQLTSPTGTDNENIQKLLADIKSSQNTDLTVNQSSSYLAAYKSLIA-AIVLNSVFENIIELEYPDYASKIKKIYTKGFTKKVEAPKTSKNQSFNIYVSGIDTYGPISS-----------VSRSDVNILMTVNRDTKKILLTTTPADAYVPIADG------------------------GNNQKDKLTHAGIYG-VDSSIHTLENLYGVDINYYVRLNFTSFLKMIDLLGGVDVHNDQEFSALHGK-FHFPVGNVHLDSEQALGFVRERY--SLADGDRDRGRNQQKVIVAILQKLTSTEALKNYSTIINSLQDS----IQTNVPLETMINLVNAQLEGGNYKVNSQDLKGTGRMDLPSMEIDDSSLAVVKAAIQDV--MEGR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------

3telA2

0.21

0.08

0.38

3.12

wPPAS

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KVEAPKTSKNQSFNIYVSGIDTYGP-----------ISSVSRSDVNILMTVNRDTKKILLTTTPADAYVPIADG------------------------GNNQKDKLTHAGIYG-VDSSIHTLENLYGVDINYYVRLNFTSFLKMIDLLGGVDVHNDQEFSALHGK-FHFPVGNVHLDSEQALGFVRERY--SLADGDRDRGRNQQKVIVAILQKLTSTEALKNYSTIINSLQDSIQ----TNVPLETMINLVNAQLEGGNYKVNSQDLKGTGRMDLPSMEIDDSSLAVVKAAIQDV--MEGR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------

3telA2

0.21

0.08

0.38

5.47

dPPAS2

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KVEAPKTSKNQSFNIYVSGIDTYGPIS-----------SVSRSDVNILMTVNRDTKKILLTTTPADAYVPIADG------------------------GNNQKDKLTHAGIYG-VDSSIHTLENLYGVDINYYVRLNFTSFLKMIDLLGGVDVHNDQEFSALH-GKFHFPVGNVHLDSEQALGFVRERY--SLADGDRDRGRNQQKVIVAILQKLTSTEALKNYSTIINSLQDS----IQTNVPLETMINLVNAQLEGGNYKVNSQDLKGTGRMDLPSMEIDDSSLAVVKAAIQDVMEGR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------

3telA2

0.21

0.08

0.38

2.71

PPAS

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KVEAPKTSKNQSFNIYVSGIDTYGP-----------ISSVSRSDVNILMTVNRDTKKILLTTTPADAYVPIADG------------------------GNNQKDKLTHAGIYG-VDSSIHTLENLYGVDINYYVRLNFTSFLKMIDLLGGVDVHNDQEFSALHGK-FHFPVGNVHLDSEQALGFVRERY--SLADGDRDRGRNQQKVIVAILQKLTSTEALKNYSTIINSLQDSIQ----TNVPLETMINLVNAQLEGGNYKVNSQDLKGTGRMDLPSMEIDDSSLAVVKAAIQDVMEGR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------

3telA2

0.20

0.08

0.38

4.76

Env-PPAS

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KVEAPKTSKNQSFNIYVSGIDTYGPISS-----------VSRSDVNILMTVNRDTKKILLTTTPADAYVPIADG------------------------GNNQKDKLTHAGIYG-VDSSIHTLENLYGVDINYYVRLNFTSFLKMIDLLGGVDVHNDQEFSALHGK-FHFPVGNVHLDSEQALGFVRERY--SLADGDRDRGRNQQKVIVAILQKLTSTEALKNYSTIINSLQDS----IQTNVPLETMINLVNAQLEGGNYKVNSQDLKGTGRMDLPSMEIDDSSLAVVKAAIQDV--MEGR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------

3telA2

0.20

0.08

0.38

1.41

MUSTER

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KVEAPKTSKNQSFNIYVSGIDTYGPIS-----------SVSRSDVNILMTVNRDTKKILLTTTPADAYVPIADG------------------------GNNQKDKLTHAGIYG-VDSSIHTLENLYGVDINYYVRLNFTSFLKMIDLLGGVDVHNDQEFSALHGK-FHFPVGNVHLDSEQALGFVRERY--SLADGDRDRGRNQQKVIVAILQKLTSTEALKNYSTIINSLQDS----IQTNVPLETMINLVNAQLESGGNKVNSQDLKGTGRMDLPSMEIDDSSLAVVKAAIQDV--MEGR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------

3telA2

0.21

0.08

0.38

2.06

dPPAS

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KVEAPKTSKNQSFNIYVSGIDTYGPIS-----------SVSRSDVNILMTVNRDTKKILLTTTPADAYVPIADG------------------------GNNQKDKLTHAGIYG-VDSSIHTLENLYGVDINYYVRLNFTSFLKMIDLLGGVDVHNDQEFSALH-GKFHFPVGNVHLDSEQALGFVRERY--SLADGDRDRGRNQQKVIVAILQKLTSTEALKNYSTIINSLQDS----IQTNVPLETMINLVNAQLEGGNYKVNSQDLKGTGRMDLPSMEIDDSSLAVVKAAIQDVMEGR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------

(a)	Iden1 is the number of template residues identical to query divided by number of aligned residues.
(b)	Iden2 is the number of template residues identical to query divided by query sequence length.
(c)	Cov is equal the number of aligned template residues divided by query sequence length.
(d)	Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment.
(e)	Download Align. list the threading program used to identify the template provide the 3D structure of aligned regions of threading templates.

Top 5 final models predicted by I-TASSER

(For each target, I-TASSER simulations generate a large ensemble of structural conformations, called decoys. To select the final models, I-TASSER uses the SPICKER program to cluster all the decoys based on the pair-wise structure similarity, and reports up to five models which corresponds to the five largest structure clusters. The confidence of each model is quantitatively measured by C-score that is calculated based on the significance of threading template alignments and the convergence parameters of the structure assembly simulations. C-score is typically in the range of [-5, 2], where a C-score of higher value signifies a model with a high confidence and vice-versa. TM-score and RMSD are estimated based on C-score and protein length following the correlation observed between these qualities. Since the top 5 models are ranked by the cluster size, it is possible that the lower-rank models have a higher C-score in rare cases. Although the first model has a better quality in most cases, it is also possible that the lower-rank models have a better quality than the higher-rank models as seen in our benchmark tests. If the I-TASSER simulations converge, it is possible to have less than 5 clusters generated. This is usually an indication that the models have a good quality because of the converged simulations.)

More about C-score

Local structure accuracy of first model

Download Model 1

C-score=-3.36

Estimated TM-score = 0.34±0.12

Estimated RMSD = 16.7±2.9Å

Download Model 2

C-score=-3.75

Download Model 3

C-score=-4.23

Download Model 4

C-score=-3.53

Download Model 5

C-score=-3.91

Proteins structureally close to the target in PDB (as identified by TM-align

(After the structure assembly simulation, I-TASSER uses the TM-align structural alignment program to match the first I-TASSER model to all structures in the PDB library. This section reports the top 10 proteins from the PDB that have the closest structural similarity, i.e. the highest TM-score, to the predicted I-TASSER model. Due to the structural similarity, these proteins often have similar function to the target. However, users are encouraged to use the data in the next section 'Predicted function using COACH' to infer the function of the target protein, since COACH has been extensively trained to derive biological functions from multi-source of sequence and structure features which has on average a higher accuracy than the function annotations derived only from the global structure comparison.)

Top 10 Identified stuctural analogs in PDB

Rank	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov
1	3telA	0.492	2.24	0.171	0.513
2	1bxrA	0.374	7.72	0.052	0.579
3	3okzA	0.363	3.37	0.195	0.402
4	1t3tA	0.361	8.30	0.052	0.598
5	3qfiA	0.354	2.37	0.214	0.376
6	3ecqB	0.343	7.87	0.039	0.541
7	4bedA	0.341	8.27	0.045	0.557
8	4pkcA	0.341	8.47	0.047	0.569
9	1llwA	0.341	8.08	0.051	0.547
10	2vdcA	0.338	8.31	0.051	0.553

(a)	Query structure is shown in cartoon, while the structural analog is displayed using backbone trace.
(b)	Ranking of proteins is based on TM-score of the structural alignment between the query structure and known structures in the PDB library.
(c)	RMSD^a is the RMSD between residues that are structurally aligned by TM-align.
(d)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(e)	Cov represents the coverage of the alignment by TM-align and is equal to the number of structurally aligned residues divided by length of the query protein.

Predicted function using COACH

(This section reports biological annotations of the target protein by COACH based on the I-TASSER structure prediction. COACH is a meta-server approach that combines multiple function annotation results from the COFACTOR, TM-SITE and S-SITE programs.)

Ligand binding sites

Rank	C-score	Cluster size	PDB Hit	Lig Name	Download Complex	Ligand Binding Site Residues
1	0.47	18	3tepA	ZTP	Rep, Mult	225,227,229,231,232,233,256,257,261,263,270,277,348,349,350,353,397,398,400,412,416,423,424,427,428,433,463,474
2	0.07	3	3telA	MN	Rep, Mult	233,254,256
3	0.02	1	2vk6A	MG	Rep, Mult	276,278

	Download the all possible binding ligands and detailed prediction summary.
	Download the templates clustering results.
(a)	C-score is the confidence score of the prediction. C-score ranges [0-1], where a higher score indicates a more reliable prediction.
(b)	Cluster size is the total number of templates in a cluster.
(c)	Lig Name is name of possible binding ligand. Click the name to view its information in the BioLiP database.
(d)	Rep is a single complex structure with the most representative ligand in the cluster, i.e., the one listed in the Lig Name column. Mult is the complex structures with all potential binding ligands in the cluster.

Enzyme Commission (EC) numbers and active sites

Rank	Cscore^EC	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov	EC Number	Active Site Residues
1	0.060	1sj2A	0.305	7.81	0.042	0.481	1.11.1.6,1.11.1.7	NA
2	0.060	2pdaA	0.335	7.49	0.026	0.512	1.2.7.1	234,323
3	0.060	2ow6A	0.292	8.57	0.038	0.491	3.2.1.114	NA
4	0.060	1itkB	0.306	7.84	0.054	0.485	1.11.1.6,1.11.1.7	NA
5	0.060	1rgqB	0.110	5.68	0.042	0.145	3.4.21.98	NA
6	0.060	1bxrA	0.374	7.72	0.052	0.579	6.3.5.5	NA
7	0.060	1pj6A	0.321	8.30	0.036	0.525	1.5.3.10	NA
8	0.060	2q1fA	0.302	8.32	0.040	0.497	4.2.2.21	NA
9	0.060	1llwA	0.341	8.08	0.051	0.547	1.4.7.1	NA
10	0.060	3ciaA	0.305	7.71	0.029	0.475	3.4.11.-	NA
11	0.060	1e7pA	0.303	8.04	0.040	0.487	1.3.99.1	412
12	0.060	3ebgA	0.325	8.34	0.053	0.534	3.4.11.-	364
13	0.060	1bglA	0.300	7.66	0.039	0.461	3.2.1.23	NA
14	0.060	2j5wA	0.337	8.05	0.044	0.544	1.16.3.1	NA
15	0.060	1qlaD	0.309	7.96	0.040	0.493	1.3.99.1	280
16	0.060	1cu1A	0.309	8.01	0.068	0.496	3.6.1.15	NA
17	0.060	1ofdA	0.341	8.17	0.046	0.547	1.4.7.1	NA
18	0.060	3iayA	0.304	8.57	0.039	0.512	2.7.7.7	NA
19	0.060	2fxhA	0.307	7.79	0.060	0.481	1.11.1.7,1.11.1.6	NA

(a)	Cscore^EC is the confidence score for the EC number prediction. Cscore^EC values range in between [0-1]; where a higher score indicates a more reliable EC number prediction.
(b)	TM-score is a measure of global structural similarity between query and template protein.
(c)	RMSD^a is the RMSD between residues that are structurally aligned by TM-align.
(d)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(e)	Cov represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein.

Gene Ontology (GO) terms

Rank	Cscore^GO	TM-score	RMSD^a	IDEN^a	Cov	PDB Hit	Associated GO Terms
Homologous GO templates in PDB
0	0.35	0.492	2.58	0.17	0.52	4de8A	GO:0006260 GO:0016020 GO:0016021
1	0.26	0.320	2.61	0.21	0.34	3mejA	GO:0005886 GO:0006351 GO:0006355 GO:0016020 GO:0016021
2	0.23	0.275	8.21	0.03	0.46	2jkbA	GO:0004308 GO:0005975 GO:0008152 GO:0016787 GO:0016798 GO:0052794 GO:0052795 GO:0052796
3	0.19	0.302	2.89	0.24	0.33	3nroB	GO:0016020 GO:0016021
4	0.15	0.291	2.48	0.18	0.31	3nxhA	GO:0005886 GO:0006351 GO:0006355 GO:0016020 GO:0016021
5	0.14	0.333	3.67	0.22	0.38	3pe5A	GO:0016020 GO:0016021
6	0.06	0.374	7.72	0.05	0.58	1bxrA	GO:0000050 GO:0000166 GO:0003824 GO:0004087 GO:0004088 GO:0005524 GO:0005829 GO:0005951 GO:0006221 GO:0006526 GO:0006807 GO:0008652 GO:0016597 GO:0016874 GO:0019856 GO:0044205 GO:0046872
7	0.06	0.316	8.26	0.04	0.52	5douD	GO:0000050 GO:0000166 GO:0001889 GO:0003824 GO:0004070 GO:0004087 GO:0004088 GO:0004151 GO:0004175 GO:0005509 GO:0005524 GO:0005543 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005743 GO:0005759 GO:0005980 GO:0006207 GO:0006508 GO:0006526 GO:0006541 GO:0006807 GO:0007494 GO:0008152 GO:0009636 GO:0010043 GO:0014075 GO:0016595 GO:0016874 GO:0019240 GO:0019433 GO:0032094 GO:0032403 GO:0032496 GO:0033762 GO:0034201 GO:0042493 GO:0042594 GO:0042645 GO:0043200 GO:0043234 GO:0044344 GO:0045909 GO:0046209 GO:0046872 GO:0048545 GO:0050667 GO:0051384 GO:0051591 GO:0055081 GO:0060416 GO:0070365 GO:0070409 GO:0071320 GO:0071377 GO:0071400 GO:0071548 GO:0072341
8	0.06	0.305	8.09	0.07	0.49	3tw6B	GO:0000166 GO:0003677 GO:0003824 GO:0004075 GO:0004736 GO:0005524 GO:0006090 GO:0006094 GO:0009374 GO:0016874 GO:0046872
9	0.06	0.308	8.68	0.04	0.52	5dotA	GO:0000050 GO:0000166 GO:0001889 GO:0003824 GO:0004070 GO:0004087 GO:0004088 GO:0004151 GO:0004175 GO:0005509 GO:0005524 GO:0005543 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005743 GO:0005759 GO:0005980 GO:0006207 GO:0006508 GO:0006526 GO:0006541 GO:0006807 GO:0007494 GO:0008152 GO:0009636 GO:0010043 GO:0014075 GO:0016595 GO:0016874 GO:0019240 GO:0019433 GO:0032094 GO:0032403 GO:0032496 GO:0033762 GO:0034201 GO:0042493 GO:0042594 GO:0042645 GO:0043200 GO:0043234 GO:0044344 GO:0045909 GO:0046209 GO:0046872 GO:0048545 GO:0050667 GO:0051384 GO:0051591 GO:0055081 GO:0060416 GO:0070365 GO:0070409 GO:0071320 GO:0071377 GO:0071400 GO:0071548 GO:0072341
10	0.06	0.302	8.24	0.03	0.49	3va7A	GO:0000166 GO:0003824 GO:0004039 GO:0004075 GO:0004847 GO:0005524 GO:0005737 GO:0016874 GO:0043419 GO:0046872
11	0.06	0.258	7.77	0.03	0.40	3bg5A	GO:0000166 GO:0003677 GO:0003824 GO:0004075 GO:0004736 GO:0005524 GO:0006090 GO:0006094 GO:0009374 GO:0016874 GO:0046872
12	0.06	0.226	8.36	0.05	0.38	3n6rA	GO:0003824 GO:0004075 GO:0004658 GO:0005524 GO:0016874 GO:0019541 GO:0046872
13	0.06	0.263	8.13	0.06	0.43	2qf7A	GO:0000166 GO:0003677 GO:0003824 GO:0004075 GO:0004736 GO:0005524 GO:0006090 GO:0006094 GO:0009374 GO:0016874 GO:0046872
14	0.06	0.264	8.31	0.06	0.43	2qf7B	GO:0000166 GO:0003677 GO:0003824 GO:0004075 GO:0004736 GO:0005524 GO:0006090 GO:0006094 GO:0009374 GO:0016874 GO:0046872
15	0.06	0.250	8.40	0.02	0.42	4qslG	GO:0000166 GO:0003677 GO:0003824 GO:0004075 GO:0004736 GO:0005524 GO:0006090 GO:0006094 GO:0009374 GO:0016874 GO:0046872
16	0.06	0.249	8.10	0.04	0.40	3bg5B	GO:0000166 GO:0003677 GO:0003824 GO:0004075 GO:0004736 GO:0005524 GO:0006090 GO:0006094 GO:0009374 GO:0016874 GO:0046872
17	0.06	0.237	8.02	0.01	0.38	4hnvB	GO:0000166 GO:0003677 GO:0003824 GO:0004075 GO:0004736 GO:0005524 GO:0006090 GO:0006094 GO:0009374 GO:0016874 GO:0046872
18	0.06	0.256	8.01	0.07	0.41	3u9sA	GO:0003824 GO:0004075 GO:0004485 GO:0005524 GO:0008300 GO:0046872 GO:1905202

Consensus prediction of GO terms

Molecular Function	GO:0004308
GO-Score	0.47
Biological Processes	GO:0006355	GO:0006260
GO-Score	0.37	0.34
Cellular Component	GO:0016021	GO:0005886
GO-Score	0.67	0.37

(a)	Cscore^GO is a combined measure for evaluating global and local similarity between query and template protein. It's range is [0-1] and higher values indicate more confident predictions.
(b)	TM-score is a measure of global structural similarity between query and template protein.
(c)	RMSD^a is the RMSD between residues that are structurally aligned by TM-align.
(d)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(e)	Cov represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein.
(f)	The second table shows a consensus GO terms amongst the top scoring templates. The GO-Score associated with each prediction is defined as the average weight of the GO term, where the weights are assigned based on Cscore^GO of the template.

[Click on result.tar.bz2 to download the tarball file including all modelling results listed on this page]

Please cite the following articles when you use the I-TASSER server:
1.	J Yang, R Yan, A Roy, D Xu, J Poisson, Y Zhang. The I-TASSER Suite: Protein structure and function prediction. Nature Methods, 12: 7-8, 2015.
2.	J Yang, Y Zhang. I-TASSER server: new development for protein structure and function predictions, Nucleic Acids Research, 43: W174-W181, 2015.
3.	A Roy, A Kucukural, Y Zhang. I-TASSER: a unified platform for automated protein structure and function prediction. Nature Protocols, 5: 725-738, 2010.
4.	Y Zhang. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics, 9: 40, 2008.