I-TASSER results

I-TASSER results for job id Rv0538

[Click on result.tar.bz2 to download the tarball file including all modelling results listed on this page]

Input Sequence in FASTA format

>protein (548 residues)
MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHR
LVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETAT
LSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLAD
QLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPRAEAGQSGSEGEQ
LAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVA
VTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVP
RPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGMPTIPTAPPTTPV
TTSATTPPTTPPTTPVTTPPTTPPTTPVTTPPTTPPTTPVTTPPTTVAPTTVAPTTVAPT
TVAPTTVAPATATPTTVAPQPTQQPTQQPTQQMPTQQQTVAPQTVAPAPQPPSGGRNGSG
GGDLFGGF

Predicted Secondary Structure

Sequence	20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHRLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETATLSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPRAEAGQSGSEGEQLAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVAVTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVPRPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGMPTIPTAPPTTPVTTSATTPPTTPPTTPVTTPPTTPPTTPVTTPPTTPPTTPVTTPPTTVAPTTVAPTTVAPTTVAPTTVAPATATPTTVAPQPTQQPTQQPTQQMPTQQQTVAPQTVAPAPQPPSGGRNGSGGGDLFGGF
Prediction	CCEEEEEHCCCCCEEEEEHCCCCCCCEEHCCEEEHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEHCCCCHHHHHHHHHHHHHCCCCCEHCCCCCCHHHHCCCCCCCEEEEHCCCCCCEEEHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Conf.Score	97798765677646899866899985665555774788858999999887776646787588998656875568999999998699875555655545665467888756776588886566568899987766666788998887777677778888899887566689998888888888888888877888988888888888888888888888888888889999999999988889999999888898888888888999999999998887788888888888888888888888899889998888888888888888889888889999999999999998888888888999988888888999988988888888999999999888999999888888899999999999999999999999989999999999999999999999999999999998899999999999998899999999888999999999999889999888899988999999999999999988777889
	H:Helix; S:Strand; C:Coil

Predicted Solvent Accessibility

Sequence	20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHRLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETATLSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPRAEAGQSGSEGEQLAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVAVTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVPRPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGMPTIPTAPPTTPVTTSATTPPTTPPTTPVTTPPTTPPTTPVTTPPTTPPTTPVTTPPTTVAPTTVAPTTVAPTTVAPTTVAPATATPTTVAPQPTQQPTQQPTQQMPTQQQTVAPQTVAPAPQPPSGGRNGSGGGDLFGGF
Prediction	52000000002300000000242621201332031354324200300120342144551201000000126220320141047360410110331310110032213200000013620110003366243441344414464222303301430554522130010000224334224442543342424336435343444243445444434344344334443445435444454433324335444343444434453435454544445423323442244233423333332324352444443443344444444333334454444442336545454554444444534343443444433444344444345544354444543434434343444434445433545444454444554465445444545444444444554464544653456436465265652556536464264653655535465346653556535664554364552656426426434334413226
	Values range from 0 (buried residue) to 8 (highly exposed residue)

Predicted Normalized B-facotr

(B-factor is a value to indicate the extent of the inherent thermal mobility of residues/atoms in proteins. In I-TASSER, this value is deduced from threading template proteins from the PDB in combination with the sequence profiles derived from sequence databases. The reported B-factor profile in the figure below corresponds to the normalized B-factor of the target protein, defined by B=(B'-u)/s, where B' is the raw B-factor value, u and s are respectively the mean and standard deviation of the raw B-factors along the sequence. (Click here to read more about predicted normalized B-factor)

Top 10 threading templates used by I-TASSER

Rank

PDB
Hit

Iden1

Iden2

Cov

Norm.
Zscore

Download
Align.

                  20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280                 300                 320                 340                 360                 380                 400                 420                 440                 460                 480                 500                 520                 540

                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |

Sec.Str
Seq

CCEEEEEHCCCCCEEEEEHCCCCCCCEEHCCEEEHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEHCCCCHHHHHHHHHHHHHCCCCCEHCCCCCCHHHHCCCCCCCEEEEHCCCCCCEEEHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
MDVALGVAVTDRVARLALVDSAAPGTVIDQFVLDVAEHPVEVLTETVVGTDRSLAGENHRLVATRLCWPDQAKADELQHALQDSGVHDVAVISEAQAATALVGAAHAGSAVLLVGDETATLSVVGDPDAPPTMVAVAPVAGADATSTVDTLMARLGDQALAPGDVFLVGRSAEHTTVLADQLRAASTMRVQTPDDPTFALARGAAMAAGAATMAHPALVADATTSLPRAEAGQSGSEGEQLAYSQASDYELLPVDEYEEHDEYGAAADRSAPLSRRSLLIGNAVVAFAVIGFASLAVAVAVTIRPTAASKPVEGHQNAQPGKFMPLLPTQQQAPVPPPPPDDPTAGFQGGTIPAVQNVVPRPGTSPGVGGTPASPAPEAPAVPGVVPAPVPIPVPIIIPPFPGWQPGMPTIPTAPPTTPVTTSATTPPTTPPTTPVTTPPTTPPTTPVTTPPTTPPTTPVTTPPTTVAPTTVAPTTVAPTTVAPTTVAPATATPTTVAPQPTQQPTQQPTQQMPTQQQTVAPQTVAPAPQPPSGGRNGSGGGDLFGGF

3chnS

0.09

0.98

1.60

MUSTER

VNSVEGVSITNRHTRKYWCRQGARGGTLISSEGYVSSKYAGRA--------NLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTV--DLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRAQGHFYGETAAVEERKAAGSRDVSLAKADAAPDEKVLDSGFR

3chnS

0.07

0.98

1.72

dPPAS

HTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTF-VVNIAQLSQDDSGRYKCGLGINSRGLSFDVSL--------EVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEKVLDSGFREIE

5gaoE

0.14

0.09

0.62

1.32

wdPPAS

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTKEAYKKLSQKFHGTKSNKK------------

1zlgA

0.08

0.07

0.90

1.78

wMUSTER

VD---GVKKCCS-------NGCGHTCQVPKTLYKGVPLKPRKEL-------RFTELQSGQLE---VKWSSKFN----------ISIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVT-DLPEEPDIPVHWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHKMAKANLYQPMTAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTL-TPGGEGPATIKTFRTPELPPSSAHRSHLKHRHPHHYKPSPERYGKPIPNPLLGLDSTRTGHHHHHH-----------------------

5gaoE

0.14

0.09

0.62

1.85

wPPAS

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTKEAYKKLSQKFHGTKSNKK------------

5gaoE

0.19

0.12

0.62

3.75

dPPAS2

-----------------------------------------------------------------------AAAAAAAAAAAAA-----AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTKEAYKKLSQKFHGTKSNKK--------------------------------------------------------------------------------------------------------------------------------------

5gaoE

0.20

0.12

0.62

2.66

PPAS

-----------------------------------------------------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTKEAYKKLSQKFHGTKSNKK-------------------------------------------------------------------------------------------------------------------------------------------

5br9A

0.14

0.05

0.37

0.70

Env-PPAS

MSTLLALDTSTEACSVALLH---EGRALSHYEVI-PRLHAQRLLPMVRDLLDEAGVALSAVDAIAFGRTGVRIAIGVVQGLAFALQRPVLAVSAILAQRAYREQGAERVAAAIDARMDEVYWGCYQLQQGEMRLAGSEA--------VLPPERVAVPWDAAAADWFGAGTGWGYVERMPQRP--VALDASLLPHAEDLLSLAGFAWARGEGVEAEQAL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

5fmwA

0.06

0.05

0.84

1.43

MUSTER

--------------------------------------------------------------------------------------SHI-RMSPWSEWSQ--LRQMFRSRSIEVFGQFNGKRCTDAVGDRRQCVPTEPCECGNDFQCSTGRCIKMRLRCNGDNDCGDFSDEDDCESEPRPPCRDRVVEESELARTAGYGINILGMDPLSTPFDNEFYNGLCNRDRDGNTLTYYRRPWNVASLIYETKGEKNFRTEHYEEQIEAFKSIIQEKTSNFNAAISLKFTPGKGSFRFSYSKNETYQLFLSYSSKKEKMFLHVKGEIHLGRFVMRNRDVVLTTTFVDDIKALPTTYEKGEYFAFLETYGTHYSSSGSLGGLYELIYVLDKASMKRKGVELKDIKRCLGYHLDVSLAFSEISVGAEFNKDDCVKRGEGRAVNITSENLIDDVVSLIRGGTRKYAFELKEKLLRGTVIDVTDFVNWASSINDAPVLISQKLSPIYNLVPVKMKNAHLKKQNLERAIEDYINEFSVRKCHTCQNGGTVILMDGKFKF

3cm9S

0.07

0.98

1.72

dPPAS

ITCYYPPTSVNRHTRKYWCRQGARGGCI------TLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQ---GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEKVLDSGF

(a)	Iden1 is the number of template residues identical to query divided by number of aligned residues.
(b)	Iden2 is the number of template residues identical to query divided by query sequence length.
(c)	Cov is equal the number of aligned template residues divided by query sequence length.
(d)	Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment.
(e)	Download Align. list the threading program used to identify the template provide the 3D structure of aligned regions of threading templates.

Top 2 final models predicted by I-TASSER

(For each target, I-TASSER simulations generate a large ensemble of structural conformations, called decoys. To select the final models, I-TASSER uses the SPICKER program to cluster all the decoys based on the pair-wise structure similarity, and reports up to five models which corresponds to the five largest structure clusters. The confidence of each model is quantitatively measured by C-score that is calculated based on the significance of threading template alignments and the convergence parameters of the structure assembly simulations. C-score is typically in the range of [-5, 2], where a C-score of higher value signifies a model with a high confidence and vice-versa. TM-score and RMSD are estimated based on C-score and protein length following the correlation observed between these qualities. Since the top 5 models are ranked by the cluster size, it is possible that the lower-rank models have a higher C-score in rare cases. Although the first model has a better quality in most cases, it is also possible that the lower-rank models have a better quality than the higher-rank models as seen in our benchmark tests. If the I-TASSER simulations converge, it is possible to have less than 5 clusters generated. This is usually an indication that the models have a good quality because of the converged simulations.)

More about C-score

Local structure accuracy of first model

Download Model 1

C-score=0.06

Estimated TM-score = 0.72±0.11

Estimated RMSD = 7.4±4.2Å

Download Model 2

C-score=-1.23

Proteins structureally close to the target in PDB (as identified by TM-align

(After the structure assembly simulation, I-TASSER uses the TM-align structural alignment program to match the first I-TASSER model to all structures in the PDB library. This section reports the top 10 proteins from the PDB that have the closest structural similarity, i.e. the highest TM-score, to the predicted I-TASSER model. Due to the structural similarity, these proteins often have similar function to the target. However, users are encouraged to use the data in the next section 'Predicted function using COACH' to infer the function of the target protein, since COACH has been extensively trained to derive biological functions from multi-source of sequence and structure features which has on average a higher accuracy than the function annotations derived only from the global structure comparison.)

Top 10 Identified stuctural analogs in PDB

Rank	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov
1	3chnS	0.887	3.36	0.076	0.980
2	3poyA	0.385	7.82	0.043	0.644
3	4xqkA	0.382	7.73	0.045	0.624
4	4bgdA	0.373	7.70	0.048	0.620
5	5l56A	0.372	7.15	0.046	0.582
6	5a22A	0.364	8.09	0.054	0.620
7	3btaA	0.363	7.68	0.025	0.599
8	2zxqA	0.362	8.09	0.036	0.615
9	4bedB	0.359	7.91	0.039	0.602
10	2b39A	0.359	7.16	0.046	0.558

(a)	Query structure is shown in cartoon, while the structural analog is displayed using backbone trace.
(b)	Ranking of proteins is based on TM-score of the structural alignment between the query structure and known structures in the PDB library.
(c)	RMSD^a is the RMSD between residues that are structurally aligned by TM-align.
(d)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(e)	Cov represents the coverage of the alignment by TM-align and is equal to the number of structurally aligned residues divided by length of the query protein.

Predicted function using COACH

(This section reports biological annotations of the target protein by COACH based on the I-TASSER structure prediction. COACH is a meta-server approach that combines multiple function annotation results from the COFACTOR, TM-SITE and S-SITE programs.)

Ligand binding sites

Rank	C-score	Cluster size	PDB Hit	Lig Name	Download Complex	Ligand Binding Site Residues
1	0.06	3	4hxbL	CA	Rep, Mult	332,333,429,430
2	0.06	3	1jz2A	NA	Rep, Mult	292,293,295,296,307,308
3	0.04	2	4xcnF	UNL	Rep, Mult	213,307,309
4	0.02	1	1hn1C	NA	Rep, Mult	271,272,279
5	0.02	1	3krdC	FEB	Rep, Mult	20,23
6	0.02	1	2ciyA	MAN	Rep, Mult	145,146,173
7	0.02	1	5sznA	CA	Rep, Mult	329,425
8	0.02	1	2zxqA	MN	Rep, Mult	235,237,255
9	0.02	1	1flgB	CA	Rep, Mult	143,146,149,151
10	0.02	1	3da3A	MG	Rep, Mult	532,548
11	0.02	1	1bjyA	CTC	Rep, Mult	77,81
12	0.02	1	2atpB	III	Rep, Mult	323,324,344,420
13	0.02	1	2o6nA	YB2	Rep, Mult	41,45
14	0.02	1	2z2pA	MG	Rep, Mult	41,57
15	0.02	1	3q2vB	MAN	Rep, Mult	107,204
16	0.02	1	4h0dA	MN	Rep, Mult	173,174
17	0.02	1	3q2wA	MAN	Rep, Mult	118,120
18	0.02	1	2o01L	CLA	Rep, Mult	493,494
19	0.02	1	1x1cA	ZN	Rep, Mult	75,79
20	0.02	1	3sy9A	C8E	Rep, Mult	384,397

	Download the all possible binding ligands and detailed prediction summary.
	Download the templates clustering results.
(a)	C-score is the confidence score of the prediction. C-score ranges [0-1], where a higher score indicates a more reliable prediction.
(b)	Cluster size is the total number of templates in a cluster.
(c)	Lig Name is name of possible binding ligand. Click the name to view its information in the BioLiP database.
(d)	Rep is a single complex structure with the most representative ligand in the cluster, i.e., the one listed in the Lig Name column. Mult is the complex structures with all potential binding ligands in the cluster.

Enzyme Commission (EC) numbers and active sites

Rank	Cscore^EC	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov	EC Number	Active Site Residues
1	0.060	3iydC	0.304	8.12	0.023	0.525	2.7.7.6	352
2	0.060	1l9mB	0.314	7.64	0.034	0.507	2.3.2.13	NA
3	0.060	1w36C	0.322	7.68	0.036	0.529	3.1.11.5	341
4	0.060	3b8cB	0.240	7.76	0.050	0.398	3.6.3.6	349,354,397
5	0.060	2fhcA	0.336	7.76	0.045	0.555	3.2.1.41	436
6	0.060	3ffzA	0.336	7.18	0.035	0.516	3.4.24.69	NA
7	0.060	3b8eA	0.254	7.86	0.048	0.432	3.6.3.9	NA
8	0.060	1zvuA	0.321	7.49	0.069	0.509	5.99.1.-	NA
9	0.060	2je8B	0.297	7.07	0.040	0.456	3.2.1.25	NA
10	0.060	2zxqA	0.362	8.09	0.036	0.615	3.2.1.97	378
11	0.060	1wd8A	0.276	6.95	0.034	0.409	3.5.3.15	NA
12	0.060	2dewX	0.295	8.30	0.042	0.515	3.5.3.15	NA
13	0.060	1f13A	0.302	7.85	0.036	0.500	2.3.2.13	NA
14	0.060	2np0A	0.328	7.76	0.028	0.542	3.4.24.69	NA
15	0.060	3btaA	0.363	7.68	0.025	0.599	3.4.24.69	NA
16	0.060	1ej6A	0.353	7.40	0.054	0.564	2.7.7.50	NA
17	0.060	2e8yA	0.311	8.10	0.036	0.536	3.2.1.41	NA
18	0.060	3gm8A	0.296	6.90	0.041	0.434	3.2.1.-	NA
19	0.060	2fhbA	0.329	7.84	0.052	0.546	3.2.1.41	NA

(a)	Cscore^EC is the confidence score for the EC number prediction. Cscore^EC values range in between [0-1]; where a higher score indicates a more reliable EC number prediction.
(b)	TM-score is a measure of global structural similarity between query and template protein.
(c)	RMSD^a is the RMSD between residues that are structurally aligned by TM-align.
(d)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(e)	Cov represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein.

Gene Ontology (GO) terms

Rank	Cscore^GO	TM-score	RMSD^a	IDEN^a	Cov	PDB Hit	Associated GO Terms
Homologous GO templates in PDB
0	0.22	0.887	3.36	0.08	0.98	3chnS	GO:0001580 GO:0001792 GO:0001895 GO:0002415 GO:0005576 GO:0005615 GO:0005886 GO:0005887 GO:0007173 GO:0016020 GO:0016021 GO:0038093 GO:0043113 GO:0043235 GO:0070062
1	0.07	0.316	7.32	0.05	0.50	3dmkA	GO:0003823 GO:0005887 GO:0006909 GO:0007411 GO:0007413 GO:0007419 GO:0007422 GO:0008046 GO:0016020 GO:0016021 GO:0016319 GO:0021551 GO:0030424 GO:0030425 GO:0032490 GO:0042802 GO:0042803 GO:0043005 GO:0043025 GO:0048666 GO:0048814 GO:0048846 GO:0050770 GO:0050976 GO:0070593
2	0.06	0.291	7.48	0.03	0.46	3b43A
3	0.06	0.253	6.01	0.07	0.35	3o4oC	GO:0004908 GO:0004910 GO:0005576 GO:0005886 GO:0006955 GO:0016020 GO:0016021 GO:0019221
4	0.06	0.236	5.99	0.08	0.33	4w4oC	GO:0002376 GO:0002479 GO:0005057 GO:0005886 GO:0006898 GO:0006911 GO:0006955 GO:0007165 GO:0016020 GO:0016021 GO:0019864 GO:0030669 GO:0031901 GO:0038096 GO:0045087 GO:0050776 GO:0060333
5	0.06	0.237	4.93	0.04	0.29	1nqbA	GO:0003823 GO:0006910 GO:0006911 GO:0006958 GO:0009897 GO:0034987 GO:0042571 GO:0042742 GO:0045087 GO:0050853 GO:0050871 GO:0072562
6	0.06	0.245	5.33	0.09	0.32	2gkiB
7	0.06	0.234	7.71	0.04	0.38	2v5yA	GO:0001937 GO:0004721 GO:0004725 GO:0005001 GO:0005737 GO:0005887 GO:0005911 GO:0005913 GO:0006470 GO:0007155 GO:0007156 GO:0007165 GO:0010596 GO:0010842 GO:0016020 GO:0016021 GO:0016311 GO:0016525 GO:0016787 GO:0016791 GO:0030027 GO:0031175 GO:0031290 GO:0035335 GO:0042493 GO:0042802 GO:0045296 GO:0045909 GO:0048471
8	0.06	0.231	5.36	0.04	0.29	3lafA	GO:0001975 GO:0003713 GO:0005042 GO:0005886 GO:0006915 GO:0007275 GO:0007399 GO:0007411 GO:0010976 GO:0016020 GO:0016021 GO:0030424 GO:0032584 GO:0038007 GO:0042802 GO:0045121 GO:0070374 GO:1903506
9	0.06	0.236	5.62	0.03	0.31	4x9fA	GO:0003823 GO:0005887 GO:0006909 GO:0007411 GO:0007413 GO:0007419 GO:0007422 GO:0008046 GO:0016020 GO:0016021 GO:0016319 GO:0021551 GO:0030424 GO:0030425 GO:0032490 GO:0042802 GO:0042803 GO:0043005 GO:0043025 GO:0048666 GO:0048814 GO:0048846 GO:0050770 GO:0050976 GO:0070593
10	0.06	0.232	5.82	0.04	0.31	4x9iB	GO:0003823 GO:0005887 GO:0006909 GO:0007411 GO:0007413 GO:0007419 GO:0007422 GO:0008046 GO:0016020 GO:0016021 GO:0016319 GO:0021551 GO:0030424 GO:0030425 GO:0032490 GO:0042802 GO:0042803 GO:0043005 GO:0043025 GO:0048666 GO:0048814 GO:0048846 GO:0050770 GO:0050976 GO:0070593
11	0.06	0.265	6.43	0.03	0.38	2jllA	GO:0005886 GO:0007155 GO:0007158 GO:0016020 GO:0016021 GO:0030424
12	0.06	0.230	5.83	0.04	0.31	4xb7A	GO:0003823 GO:0005887 GO:0006909 GO:0007411 GO:0007413 GO:0007419 GO:0007422 GO:0008046 GO:0016020 GO:0016021 GO:0016319 GO:0021551 GO:0030424 GO:0030425 GO:0032490 GO:0042802 GO:0042803 GO:0043005 GO:0043025 GO:0048666 GO:0048814 GO:0048846 GO:0050770 GO:0050976 GO:0070593
13	0.06	0.236	4.09	0.05	0.28	1om3K
14	0.06	0.238	4.34	0.08	0.28	4frwA	GO:0001618 GO:0004872 GO:0005102 GO:0005576 GO:0005886 GO:0005887 GO:0005911 GO:0005912 GO:0005913 GO:0007155 GO:0007156 GO:0007157 GO:0008037 GO:0016020 GO:0016021 GO:0016032 GO:0030054 GO:0034332 GO:0042803 GO:0046718 GO:0050839 GO:0070062
15	0.06	0.243	4.90	0.05	0.31	2p1yA
16	0.06	0.230	5.27	0.05	0.30	2y23A	GO:0002230 GO:0005737 GO:0005863 GO:0006936 GO:0008307 GO:0030017 GO:0031430 GO:0032982 GO:0042802 GO:0042803 GO:0098779 GO:0098792
17	0.06	0.219	5.30	0.04	0.29	3p30H
18	0.06	0.238	4.33	0.08	0.28	4hh8A	GO:0016020 GO:0016021

Consensus prediction of GO terms

Molecular Function	GO:0019763
GO-Score	0.43
Biological Processes	GO:0051668	GO:0050913	GO:0002414	GO:0050912	GO:0001894	GO:0002768	GO:0002386	GO:0072657	GO:0038127
GO-Score	0.43	0.43	0.43	0.43	0.43	0.43	0.43	0.43	0.43
Cellular Component	GO:0031226	GO:1903561	GO:0031988	GO:0043234	GO:0016021
GO-Score	0.54	0.43	0.43	0.43	0.36

(a)	Cscore^GO is a combined measure for evaluating global and local similarity between query and template protein. It's range is [0-1] and higher values indicate more confident predictions.
(b)	TM-score is a measure of global structural similarity between query and template protein.
(c)	RMSD^a is the RMSD between residues that are structurally aligned by TM-align.
(d)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(e)	Cov represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein.
(f)	The second table shows a consensus GO terms amongst the top scoring templates. The GO-Score associated with each prediction is defined as the average weight of the GO term, where the weights are assigned based on Cscore^GO of the template.

[Click on result.tar.bz2 to download the tarball file including all modelling results listed on this page]

Please cite the following articles when you use the I-TASSER server:
1.	J Yang, R Yan, A Roy, D Xu, J Poisson, Y Zhang. The I-TASSER Suite: Protein structure and function prediction. Nature Methods, 12: 7-8, 2015.
2.	J Yang, Y Zhang. I-TASSER server: new development for protein structure and function predictions, Nucleic Acids Research, 43: W174-W181, 2015.
3.	A Roy, A Kucukural, Y Zhang. I-TASSER: a unified platform for automated protein structure and function prediction. Nature Protocols, 5: 725-738, 2010.
4.	Y Zhang. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics, 9: 40, 2008.