Threading Zmax Znorm MUSTER 5.50 0.95 dPPAS 11.09 1.19 wdPPAS 28.12 3.02 wMUSTER 7.36 1.27 wPPAS 19.73 2.82 dPPAS2 39.40 3.75 PPAS 12.57 1.80 Env-PPAS 14.91 1.86 ================================================================== | Estimated accuracy of your models | ================================================================== Estimated Clusters (N=8283) --------------------- ------------------ Model# C-score TM-score RMSD (A) #decoys density ------ ------- ---------- -------- ------- ------- model1 -4.39 0.26+-0.08 18.4+-2.3 358 0.006 model2 -4.54 345 0.005 model3 -4.59 296 0.005 model4 -4.54 209 0.005 model5 -4.95 197 0.003 C-score is a confidence score of the I-TASSER predictions which is typically in [-5,2]. TM-score and RMSD measure how close the model is to the native structure and both are estimated based on the C-score. TM-score is in [0,1] with a value >0.5 implying the model of correct topology. The TM-score and RMSD estimations are made only for the first model because absolute values of TM-score and RMSD for the lower-rank models do not strongly correlate with the C-score. The models are ranked based on the structure density of I-TASSER simulations. Please cite following articles when you use the I-TASSER Suite: 1. Y Zhang. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics, 9: 40 (2008). 2. A Roy, A Kucukural, Y Zhang. I-TASSER: a unified platform for automated protein structure and function prediction. Nature Protocols, 5: 725-738 (2010). 3. J Yang, A Roy, Y Zhang. Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment. Bioinformatics, 29:2588-2595 (2013).