Threading Zmax Znorm MUSTER 5.39 0.93 dPPAS 7.17 0.77 wdPPAS 8.71 0.94 wMUSTER 6.00 1.03 wPPAS 10.90 1.56 dPPAS2 10.16 0.97 PPAS 8.71 1.24 Env-PPAS 8.30 1.04 ================================================================== | Estimated accuracy of your models | ================================================================== Estimated Clusters (N=6777) --------------------- ------------------ Model# C-score TM-score RMSD (A) #decoys density ------ ------- ---------- -------- ------- ------- model1 -2.65 0.41+-0.14 13.6+-4.0 2093 0.067 model2 -2.61 1506 0.069 model3 -3.45 753 0.030 model4 -3.35 753 0.033 model5 -4.47 368 0.011 C-score is a confidence score of the I-TASSER predictions which is typically in [-5,2]. TM-score and RMSD measure how close the model is to the native structure and both are estimated based on the C-score. TM-score is in [0,1] with a value >0.5 implying the model of correct topology. The TM-score and RMSD estimations are made only for the first model because absolute values of TM-score and RMSD for the lower-rank models do not strongly correlate with the C-score. The models are ranked based on the structure density of I-TASSER simulations. Please cite following articles when you use the I-TASSER Suite: 1. Y Zhang. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics, 9: 40 (2008). 2. A Roy, A Kucukural, Y Zhang. I-TASSER: a unified platform for automated protein structure and function prediction. Nature Protocols, 5: 725-738 (2010). 3. J Yang, A Roy, Y Zhang. Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment. Bioinformatics, 29:2588-2595 (2013).